Scaffold Ga0157203_1017942

Overview

Basic Information

• Taxon OID: 3300012663
• Scaffold ID: Ga0157203_1017942
• Source Dataset Name: Freshwater microbial communities from Indian River, Ontario, Canada - S50
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Molecular Research LP (MR DNA)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1059
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada

Source Dataset Sampling Location

• Location Name: Warsaw, Ontario
• Coordinates
  • Lat. (^o): 44.42735
  • Long. (^o): -78.1359

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008752	Metagenome / Metatranscriptome	328	Y
F033426	Metagenome	177	Y
F033792	Metagenome / Metatranscriptome	176	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0157203_10179421	F033426	N/A	DKAHKLLQKIEADYEKEDEAMMIRLIKARDSLWT*
Ga0157203_10179422	F033792	GGA	MSISDQNEHCIEDLYAKYLQFTSVMLEDYKDIEIAGVMITQALSMYRTVLPEEDYQRMVKSIYERRNDVKTFD*
Ga0157203_10179423	F008752	N/A	MKEEMMSKPSTELEPQTPAEGVLKRNSWGDAITYQVVCECHDADHDHNVWVEADDHRVTVTTYTTQKSQWWSLNRWQTIWILLTKGYVKYEANISMTEQQALNYAETLKKAVKDVKNFKQS*