Scaffold Ga0157203_1003355

Overview

Basic Information

• Taxon OID: 3300012663
• Scaffold ID: Ga0157203_1003355
• Source Dataset Name: Freshwater microbial communities from Indian River, Ontario, Canada - S50
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Molecular Research LP (MR DNA)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3344
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (70.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada

Source Dataset Sampling Location

• Location Name: Warsaw, Ontario
• Coordinates
  • Lat. (^o): 44.42735
  • Long. (^o): -78.1359

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004978	Metagenome / Metatranscriptome	416	Y
F005705	Metagenome / Metatranscriptome	392	Y
F007524	Metagenome / Metatranscriptome	349	Y
F036671	Metagenome / Metatranscriptome	169	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0157203_100335510	F036671	N/A	LDWFMLRVRVMVENIELSSEFLGGCLYKDAKEVLTDGTAEDLIDMALTEAKKDVYRLYKKFQDISWELDAEGATA*
Ga0157203_10033552	F005705	AGGAG	MKITIKVPKKHREHIVLFCAGTPFKQKVVQSKVKFKRQPKHKGKHND*
Ga0157203_10033555	F004978	AGGAG	MITADTLEVLTSYSPQYLTKAAQNAGYRGPNFSSCKFVGITNGGQFCYMAVFQVEGGTDSTKVFLTYDHAEDRVFADVQLTDLA*
Ga0157203_10033558	F007524	N/A	MLNKKEIKLRKLSNTHAVAINKLMLPLISTLAHIDDDNDINMYKMYADDIAHNIAALCVFNNTLDAEVLHDNIMRQDTCPREHFYTVLQYIEDNKLINANMFACR*