Scaffold Ga0157203

Basic Information
Taxon OID	3300012663 Open in IMG/M
Scaffold ID	Ga0157203_1001006 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Indian River, Ontario, Canada - S50
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Molecular Research LP (MR DNA)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300012663 Open in IMG/M

Scaffold ID

Ga0157203_1001006 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Indian River, Ontario, Canada - S50

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Molecular Research LP (MR DNA)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	7304
Total Scaffold Genes	23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	19 (82.61%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (85.71%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

7304

Total Scaffold Genes

23 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

19 (82.61%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (85.71%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada

Source Dataset Sampling Location
Location Name	Warsaw, Ontario
Coordinates	Lat. (^o)	44.42735	Long. (^o)	-78.1359	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Warsaw, Ontario

Coordinates

Lat. (^o)

44.42735

Long. (^o)

-78.1359

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000447	Metagenome / Metatranscriptome	1128	Y
F001562	Metagenome / Metatranscriptome	670	Y
F002245	Metagenome / Metatranscriptome	578	Y
F003690	Metagenome / Metatranscriptome	473	Y
F004051	Metagenome / Metatranscriptome	455	Y
F006744	Metagenome / Metatranscriptome	365	Y
F017134	Metagenome / Metatranscriptome	242	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0157203_100100613	F000447	AGGAG	MGYIEFARINDEGVSWVDLSEATPDELFNIEIGLLNEGAFE*
Ga0157203_100100616	F006744	AGAAGG	MNLDEYKAYVIATRQASKAEALSVLSATITKSTTKEGN*
Ga0157203_100100617	F001562	GAG	MKSQLERDIEIKESFIDLLNDVYPTVKIGYSTFTPAEILECCDPVAFAIGLVEHEDYLAELEEE*
Ga0157203_100100618	F003690	GGAG	MIPTGFELSITNEYGFELDSFLGAIYLPWHTIIITTLAVIAYKIYKRKKNK*
Ga0157203_10010062	F004051	GAGG	MTINDKLYQVGDLFTTLKSKRTGVIKEIHPQASGSVRVLLEMPNKETRWTSVSASTLAS*
Ga0157203_10010064	F002245	N/A	MKVPHTVVFEAIIDLDKIPANLLPALIALDETSITLMCKQATLHALGMSNVLPLANENNSWAEVTIKEGN*
Ga0157203_10010067	F017134	GAGG	MELFTVSCLNYEICGAQETFDNESEYEIYGDDYICAECYASEEMEFFETIGWSDSDALASAGHGMDEDY*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0157203_1001006

Overview

Ecosystem & Geography

Associated Families

Sequences