Scaffold Ga0157203_1001005

Overview

Basic Information

• Taxon OID: 3300012663
• Scaffold ID: Ga0157203_1001005
• Source Dataset Name: Freshwater microbial communities from Indian River, Ontario, Canada - S50
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Molecular Research LP (MR DNA)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7306
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (47.06%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae → unclassified Methylophilaceae → Methylophilaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada

Source Dataset Sampling Location

• Location Name: Warsaw, Ontario
• Coordinates
  • Lat. (^o): 44.42735
  • Long. (^o): -78.1359

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000671	Metagenome / Metatranscriptome	945	Y
F014140	Metagenome / Metatranscriptome	265	Y
F066776	Metagenome / Metatranscriptome	126	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0157203_100100511	F000671	GAGG	MEKVLCYSCNKSKHQLNLRKSTLLPINLLMCEGCISSKFEPRWVIILSGRQYGSEFVRDFVIKKRYHGADITASELLV*
Ga0157203_10010054	F014140	N/A	MHKYIVKLVVEVEVEAFNLDDATDYIGDIFNIDDEIKKVSISSIKEKK*
Ga0157203_10010056	F066776	N/A	MQGVEIFINRSQSKVQKSFWDNYDLVIWKKDSTGYSDISGMFHNNQWGKAEKISVNNKGVWKLPKKYVKYFK*