Basic Information | |
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Taxon OID | 3300012663 Open in IMG/M |
Scaffold ID | Ga0157203_1001005 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Indian River, Ontario, Canada - S50 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | Molecular Research LP (MR DNA) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 7306 |
Total Scaffold Genes | 17 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 8 (47.06%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae → unclassified Methylophilaceae → Methylophilaceae bacterium | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada |
Source Dataset Sampling Location | ||||||||
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Location Name | Warsaw, Ontario | |||||||
Coordinates | Lat. (o) | 44.42735 | Long. (o) | -78.1359 | Alt. (m) | Depth (m) | Location on Map | |
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Family | Category | Number of Sequences | 3D Structure? |
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F000671 | Metagenome / Metatranscriptome | 945 | Y |
F014140 | Metagenome / Metatranscriptome | 265 | Y |
F066776 | Metagenome / Metatranscriptome | 126 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0157203_100100511 | F000671 | GAGG | MEKVLCYSCNKSKHQLNLRKSTLLPINLLMCEGCISSKFEPRWVIILSGRQYGSEFVRDFVIKKRYHGADITASELLV* |
Ga0157203_10010054 | F014140 | N/A | MHKYIVKLVVEVEVEAFNLDDATDYIGDIFNIDDEIKKVSISSIKEKK* |
Ga0157203_10010056 | F066776 | N/A | MQGVEIFINRSQSKVQKSFWDNYDLVIWKKDSTGYSDISGMFHNNQWGKAEKISVNNKGVWKLPKKYVKYFK* |
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