Scaffold Ga0157203_1000425

Overview

Basic Information

• Taxon OID: 3300012663
• Scaffold ID: Ga0157203_1000425
• Source Dataset Name: Freshwater microbial communities from Indian River, Ontario, Canada - S50
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Molecular Research LP (MR DNA)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13227
• Total Scaffold Genes: 42
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 25 (59.52%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (77.78%)
• Associated Families: 9

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada

Source Dataset Sampling Location

• Location Name: Warsaw, Ontario
• Coordinates
  • Lat. (^o): 44.42735
  • Long. (^o): -78.1359

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011754	Metagenome / Metatranscriptome	287	Y
F014503	Metagenome / Metatranscriptome	262	Y
F019433	Metagenome	229	Y
F021237	Metagenome / Metatranscriptome	219	Y
F023522	Metagenome	209	Y
F032277	Metagenome / Metatranscriptome	180	Y
F042301	Metagenome / Metatranscriptome	158	Y
F048089	Metagenome / Metatranscriptome	148	Y
F064393	Metagenome / Metatranscriptome	128	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0157203_100042517	F019433	N/A	MAMAGTKIATLDEILVTRAKIKFPHRVNFDNITRNQIEEMSIWCIDNCKELWREEHYHALYFQFTDERDAVMFMLKFGGRGNV*
Ga0157203_100042520	F014503	N/A	MKTSVHHWRFNDGVTPINPGNRFGETVLPRSWSCWVYPEDDHEFEIWMARHCPTADYTHRFNSGNPMWTVTILDDKEATLFTLKYGN*
Ga0157203_100042522	F023522	AGGA	MGTPPEMITSNLFKAVKAENHLKVDQRLMELLGTYSMILLPDEDFAEKLTWCLEHCQGKFRDLSDINGRAWYFQNEQDASMFALKWS*
Ga0157203_100042524	F011754	GGAG	MKMGFSLGRCVRDIVKGLVDIDDVAFIIAATSIQDEPQLANVIEQYMYRDDDYLYGLDESKCQEVALELWKTNKILQPRRQGIHRHRQPENSVWVDMFPTELSENSSVKSAWDAYRFMLHMVENVDNEAVEVFKQ*
Ga0157203_100042525	F042301	AGGAG	MVKEGSKWTGTSDNIKFHVIHVIELEGHTWVHYIKENAPEDSNREYSCYLESFLSRFRPILE*
Ga0157203_100042536	F048089	GGA	MLKPGKTFVLSKQTKRFMATFVNAEERNAFKRAMIQAELASGIVVKSAPRDKNAPRGNTGYQMNDTGTASTAK*
Ga0157203_10004254	F032277	AGG	MINAVASLLLAGMLSNEPRCVKWTWTGDVYSRRVVCVEWSKPPPKDKDPKKA*
Ga0157203_10004256	F064393	AGGA	MDKWTTWYDSLPEHTKQYLKSQPVWHDRDMWKAGLLGCAIGVLIGLAV*
Ga0157203_10004257	F021237	GGAG	MRYFDYEWDLEPNRILLDPELNIDKLGWKGGDYFKVTNVNGRAMLVKVDPLIKFIKDGENG*