Scaffold Ga0157203_1000371

Overview

Basic Information

• Taxon OID: 3300012663
• Scaffold ID: Ga0157203_1000371
• Source Dataset Name: Freshwater microbial communities from Indian River, Ontario, Canada - S50
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Molecular Research LP (MR DNA)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14242
• Total Scaffold Genes: 33
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 19 (57.58%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada

Source Dataset Sampling Location

• Location Name: Warsaw, Ontario
• Coordinates
  • Lat. (^o): 44.42735
  • Long. (^o): -78.1359

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010684	Metagenome / Metatranscriptome	300	Y
F015600	Metagenome / Metatranscriptome	253	Y
F023106	Metagenome / Metatranscriptome	211	Y
F024789	Metagenome / Metatranscriptome	204	Y
F040623	Metagenome / Metatranscriptome	161	Y
F092053	Metagenome / Metatranscriptome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0157203_100037122	F023106	GGA	MRISRRITDEEKVANKLGNTISDLRVDLELVGEYLAKSQPNVVYNRLQVIAESAKETKEGTNYAHNNI*
Ga0157203_100037124	F010684	AGGA	MNTYEVEVIFEPTGDYMNFKYEAESDNEEDLCREILNQLSIVSFKVDE*
Ga0157203_100037127	F015600	GAGG	MMNMTLEPRLQKLIDLGESGTDILHGELKNLMLEAETEYIEIEKEEREGGYSDAMLSMDRTRAEGRMDALVEVYALTYQLAFAISDRTKNRG*
Ga0157203_100037131	F040623	AGGAG	LKVRISLEQTIDIDDAMSNDIGFELYGPPDMSTEDKVDYLMARFAEDIDTMVKYDEVLGNISVEYIED*
Ga0157203_100037132	F092053	AGGA	MKIKISKEHKEELQDQASQIVYFEASMSDEDDAVKGTYLRLVEIYKVAFEAGANSK*
Ga0157203_10003718	F024789	N/A	MERFGALMPKDPKIMTMDWRSLGYWPIWKDGKKIWVPKDDKSFDKD*