Scaffold Ga0157203_1000021

Overview

Basic Information

• Taxon OID: 3300012663
• Scaffold ID: Ga0157203_1000021
• Source Dataset Name: Freshwater microbial communities from Indian River, Ontario, Canada - S50
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Molecular Research LP (MR DNA)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 66216
• Total Scaffold Genes: 73
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 49 (67.12%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 8 (88.89%)
• Associated Families: 9

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada

Source Dataset Sampling Location

• Location Name: Warsaw, Ontario
• Coordinates
  • Lat. (^o): 44.42735
  • Long. (^o): -78.1359

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000447	Metagenome / Metatranscriptome	1128	Y
F004840	Metagenome / Metatranscriptome	421	Y
F006385	Metagenome / Metatranscriptome	374	Y
F014142	Metagenome / Metatranscriptome	265	Y
F039141	Metagenome / Metatranscriptome	164	Y
F062758	Metagenome	130	Y
F070856	Metagenome / Metatranscriptome	122	N
F080046	Metagenome / Metatranscriptome	115	Y
F085710	Metagenome / Metatranscriptome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0157203_100002110	F085710	AGGAG	MDYNEYYDEIYLEIYEEFGAQSVSDPAYAESLKK*
Ga0157203_100002113	F080046	AGGAG	MSISLANKIAVGKFFQPPSKYINHKVVEIVSLNEDSGIATVILEKYTISGNANVYKNNNVFTIELPYSEFQNLNGWSE*
Ga0157203_100002114	F014142	AGG	MNTLNTISVVAEPTHPMSSSNTKNNNIFRLSNGNYISRMAYVYMVASENLISHKYLSPNESKWVFANKVGK*
Ga0157203_100002125	F062758	AGG	MAEILLSNEDLTVFGGPEGISLDLDIGPQGDRGSIIIGVLGNPTEAAVAQTIVQDVQALDLAINYQSSSPSFKTVFQLVSTGGSLQWTELISLKANSYSAIKQITASGGKLVIPPINVTEIYDLSENEVTSANFKINYSISAPDTTGPLATTLIVKDLITSPGFLALPLEIKGVEYDGTTWAPMTGPKTVHLFITVV*
Ga0157203_10000213	F004840	GAGG	MDYEYLVTCQYDFEESPHWQQRYENEFGAWESFFRFTDWGMANEYSTVNIYTPTGKCYTKVFYRDGRVQVRA*
Ga0157203_100002134	F070856	N/A	MANYRNPNETPITGVVAPAIYNIGNKPPLINWTVVIGDTASFRIYVEDDMGNPLDYNTATFDPNDAGWVITGDFRRYSDDDGDDLLFTVFPDKTEFDDPGEFTVTLSATQSKQLLTGDVFDIQLKDAVRVWTVCQGEMIMLGEITDQA*
Ga0157203_10000214	F000447	GAG	MGYIEIFRIDNEGAGWIDLSQANSDELFDLEVGLLNEGALFTTKEAE*
Ga0157203_10000216	F006385	AGGAG	MILDNGTLIAIVIALAGSLSMMLVFWKQNMEQQKEIRRLQIVLRTERLKK*
Ga0157203_100002162	F039141	GAGG	MTTSATANLPDPQKASDDASVKIATPDLIIQDQDIMSIEIMTDLIFEDIGGYELATISRHDLVNGQKVVYSPIKNLTDLYLQYNPNNILRLQSADSYFKSLPISIFDHLPVCGTGYDISPPDSNPNETDKTKWTKTPNCKSVYIDPLSGDLIINLVNVKEGEQAEVQILNSGDVFSATIHYGSN*