Basic Information | |
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Taxon OID | 3300012525 Open in IMG/M |
Scaffold ID | Ga0129353_1493111 Open in IMG/M |
Source Dataset Name | Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_27_0.2_RNA2 (Metagenome Metatranscriptome) |
Source Dataset Category | Metatranscriptome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1536 |
Total Scaffold Genes | 6 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (83.33%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Chesapeake Bay | |||||||
Coordinates | Lat. (o) | 37.0306 | Long. (o) | -76.0464 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F003051 | Metagenome / Metatranscriptome | 510 | Y |
F067760 | Metagenome / Metatranscriptome | 125 | N |
F087019 | Metagenome / Metatranscriptome | 110 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0129353_14931111 | F067760 | N/A | IGYNIMRVRRIDMFIMRKYGDYCDESLRYNDIQKTFQAWKEDNIIELVKEYKEYRRLDRYGSQV* |
Ga0129353_14931114 | F003051 | GAGG | MKTKILKNKVTIDMSVSEYDTLFKYIDKLDSMLNTLHETNDLWLSDIHNLSSLKYELVELLDAEWNTDTYRYIKRGSK* |
Ga0129353_14931115 | F087019 | GAGG | MIGEIIGLGFVILFMLVSLTAVGFIIADSNYDKKRKDD* |
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