Scaffold Ga0129353_1493111

Overview

Basic Information

• Taxon OID: 3300012525
• Scaffold ID: Ga0129353_1493111
• Source Dataset Name: Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_27_0.2_RNA2 (Metagenome Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1536
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Chesapeake Bay
• Coordinates
  • Lat. (^o): 37.0306
  • Long. (^o): -76.0464

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003051	Metagenome / Metatranscriptome	510	Y
F067760	Metagenome / Metatranscriptome	125	N
F087019	Metagenome / Metatranscriptome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0129353_14931111	F067760	N/A	IGYNIMRVRRIDMFIMRKYGDYCDESLRYNDIQKTFQAWKEDNIIELVKEYKEYRRLDRYGSQV*
Ga0129353_14931114	F003051	GAGG	MKTKILKNKVTIDMSVSEYDTLFKYIDKLDSMLNTLHETNDLWLSDIHNLSSLKYELVELLDAEWNTDTYRYIKRGSK*
Ga0129353_14931115	F087019	GAGG	MIGEIIGLGFVILFMLVSLTAVGFIIADSNYDKKRKDD*