Scaffold Ga0150984_101419785

Overview

Basic Information

• Taxon OID: 3300012469
• Scaffold ID: Ga0150984_101419785
• Source Dataset Name: Combined assembly of Soil carbon rhizosphere
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1353
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere → Avena Fatua Rhizosphere Microbial Communities From Hopland, California, Usa, For Root-Enhanced Decomposition Of Organic Matter Studies

Source Dataset Sampling Location

• Location Name: Hopland, California, USA
• Coordinates
  • Lat. (^o): 38.97364
  • Long. (^o): -123.117453
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002023	Metagenome / Metatranscriptome	603	Y
F005075	Metagenome / Metatranscriptome	413	Y
F094086	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0150984_1014197852	F005075	N/A	VIEAANVLGVLAAVLLLMAVITWVKLIRGPLMQRTDGSTGTDSTQGELASELLFWAAGLGPAAAFLAIAGWIFI*
Ga0150984_1014197853	F094086	AGG	MTNDQIRGEHDRLQVLLEAYEARAAADSIPDHHAGLRQRIAALALKLAEKDVA*
Ga0150984_1014197854	F002023	GGAG	MTQSVLLIAVTAFVTWIIMRSVRSTTADPKRLSAQESEAERAKEVGSQLDGARDRASVVEVERNKLALAKAVKAALWVTEARLNAAVPELLKMAQLWAGKSSVRGKKWTAPKGVTDIEGLDNSTAAWASWSFDGHHWRIDGQWQPSTLPEEIEGAVGTFKVLVDRQLVLDMTISAKDPQLLWVDALTVGPWVSE