Basic Information | |
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Taxon OID | 3300012417 Open in IMG/M |
Scaffold ID | Ga0138262_1207827 Open in IMG/M |
Source Dataset Name | Metatranscriptomics of polar marine prokaryotic and eukaryotic communities from Palmer Station, Antarctica after 72hr light incubation - RNA13.B_72.20151113 (Metagenome Metatranscriptome) |
Source Dataset Category | Metatranscriptome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 556 |
Total Scaffold Genes | 1 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Novel Protein Genes | 1 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 1 |
Taxonomy | |
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All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Unclassified → Unclassified → Polar Marine → Polar Marine Prokaryotic And Eukaryotic Communities From Antarctica During Spring Seasonal Transition |
Source Dataset Sampling Location | ||||||||
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Location Name | Antarctica | |||||||
Coordinates | Lat. (o) | -64.775 | Long. (o) | -64.053 | Alt. (m) | Depth (m) | 0 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F027741 | Metagenome / Metatranscriptome | 193 | N |
Protein ID | Family | RBS | Sequence |
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Ga0138262_12078271 | F027741 | N/A | MKFFAYVALLGAVNAAFLQDDTESDHSKEFYNAWDAVKDEEEGYHRAMPSYFAGDDDDLFMRSMIKTYALEGKNKDGSPNGSFVMDEATTRAASSEVLGTHKGMKGDALKKYLDTYFPRTFAHFDVTKGGKIEVIKMPQFMRFLASDQYTSLLP* |
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