Scaffold Ga0134048_1388168

Overview

Basic Information

• Taxon OID: 3300012400
• Scaffold ID: Ga0134048_1388168
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_2_4_2 metaT (Metagenome Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 949
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: USA: Angelo Coastal Reserve, California
• Coordinates
  • Lat. (^o): 39.7181
  • Long. (^o): -123.6527
  • Depth (m): .4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F028852	Metagenome / Metatranscriptome	190	Y
F077083	Metagenome / Metatranscriptome	117	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0134048_13881681	F077083	N/A	PEGDRMRRVLEKSFLIMMVVGGLTALGKPASAYVAHVLTSIPVASSEGRELEDAVRTAINNVLEHAIAVVPTLVDVRDARVVGDRIYILLLLADDDGAAIVQRLTDGSADEL*
Ga0134048_13881682	F028852	AGGAG	MRIIHLALVLALVVLAAPAWGADLDRWFHVSWGPAPHSNTPKPRIQASVRNDSPYRVTDVQLEVEGLIPDERSAGRRVVWALGDIEPGGESSFVTEAMDGAVTYRITVTSFDLVSVGSKH