Scaffold Ga0157138_1005196

Overview

Basic Information

• Taxon OID: 3300012352
• Scaffold ID: Ga0157138_1005196
• Source Dataset Name: Freshwater microbial communities from Baxter Creek, Ontario, Canada - S37
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Molecular Research LP (MR DNA)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2191
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada

Source Dataset Sampling Location

• Location Name: Fraserville, Ontario
• Coordinates
  • Lat. (^o): 44.16961
  • Long. (^o): -78.4089

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005531	Metagenome / Metatranscriptome	397	Y
F006744	Metagenome / Metatranscriptome	365	Y
F045756	Metagenome	152	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0157138_10051963	F005531	GGAG	MIINYSLWQGAQLLSVNNKASKPEDILAVMEELSKLGKGFSFIVREVNTNE*
Ga0157138_10051965	F045756	AGG	MNKYTVTVSYVCEAESELSAVFALQKSLHPLSENELEKFNAIKVEENK*
Ga0157138_10051969	F006744	AGAAGG	MNLDEFRAHVEATRKATKVQALSVLSATITNTQTKGDN*