Scaffold Ga0157138_1000022

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0157138_1000022

Scaffold Ga0157138_1000022

Overview

Basic Information
Taxon OID	3300012352 Open in IMG/M
Scaffold ID	Ga0157138_1000022 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Baxter Creek, Ontario, Canada - S37
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Molecular Research LP (MR DNA)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	46323
Total Scaffold Genes	62 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	46 (74.19%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada

Source Dataset Sampling Location
Location Name	Fraserville, Ontario
Coordinates	Lat. (^o)	44.16961	Long. (^o)	-78.4089	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F029288	Metagenome / Metatranscriptome	189	Y
F057778	Metagenome	136	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0157138_10000228	F057778	GAGG	MDEQALEIQEALADYLANPEQYTLADFEEIFQDRDPFEFL*
Ga0157138_10000229	F029288	N/A	MIGKRNEARRKAESQALFHSMLKAGKKQIVTPDKFKGTRQSNKAKAIREDIN*

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