Scaffold Ga0157138_1000018

Overview

Basic Information

• Taxon OID: 3300012352
• Scaffold ID: Ga0157138_1000018
• Source Dataset Name: Freshwater microbial communities from Baxter Creek, Ontario, Canada - S37
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Molecular Research LP (MR DNA)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 54788
• Total Scaffold Genes: 97
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 73 (75.26%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada

Source Dataset Sampling Location

• Location Name: Fraserville, Ontario
• Coordinates
  • Lat. (^o): 44.16961
  • Long. (^o): -78.4089

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000264	Metagenome / Metatranscriptome	1424	Y
F007115	Metagenome / Metatranscriptome	357	Y
F017301	Metagenome / Metatranscriptome	241	Y
F030765	Metagenome	184	Y
F061860	Metagenome / Metatranscriptome	131	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0157138_100001814	F007115	GGA	MKRHTLSTSKEEKVAVSIGKLLSDFTLDLEAVGKYLAVSNPHIIYVRTLTVLEATEYNKTVAEYREIGKYYGNGISN*
Ga0157138_100001830	F030765	GGAG	VKESEFDEEFDLEATTKAIVEKAKAEVKSKYGNKKRHRQ*
Ga0157138_100001847	F017301	AGGA	MDEKMKALLASYGRSVLASGLALYMAGVTDPKDLWTALVAAVAPVALRAINPNDKAFGRLPEVSAIEEALKTAKAPVKKKSPTKKVSTK*
Ga0157138_100001876	F000264	AGGAG	MAAKLYTSEAWLRKRFLVDKKTPQEIAKESGASVETIYVYLAKFGLRKSKR*
Ga0157138_10000189	F061860	AGGA	MNPDYNIPIHIQRLIDLGESGTDILHGELKNMMYECEKELVPLLENSNEVGSDEDYEDTVQRLYNEGYMDALTAVYQLTYQLAFAIDERKKNGNV*