Scaffold Ga0137372_10660598

Overview

Basic Information

• Taxon OID: 3300012350
• Scaffold ID: Ga0137372_10660598
• Source Dataset Name: Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_60_16 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 761
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 39.5673
  • Long. (^o): -123.4758

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002111	Metagenome / Metatranscriptome	592	Y
F012223	Metagenome / Metatranscriptome	282	Y
F094845	Metagenome / Metatranscriptome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0137372_106605981	F002111	AGAAG	MGVAPPFVAYSTLTEALVPAPEWHSVYQSLQALKGHVQEYPGCQRFDVFVRAEAAGEVRIHCYTTWDTPAQLEAFLERGYTFERLLADLES
Ga0137372_106605982	F094845	AGGAGG	MPTGDSPQKVRDYYLYLQGHHQSDGRIATWHVDWLSLAWLWGFVIVLGLVLIWWIWQYRTTRQRTGIYPVDSFGGFTSELAGPATRFFVLLTVILTGFAVALIVGHIVWGQKF*
Ga0137372_106605983	F012223	N/A	SGLALVAFVAAWKAGHFHELDLPAGIPLLVDEEDYYTPEWALDEEEWTDADG*