Scaffold Ga0157140_10000034

Overview

Basic Information

• Taxon OID: 3300012348
• Scaffold ID: Ga0157140_10000034
• Source Dataset Name: Freshwater microbial communities from Coldwater Creek, Ontario, Canada - S44
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Molecular Research LP (MR DNA)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 31121
• Total Scaffold Genes: 40
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 32 (80.00%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 8 (80.00%)
• Associated Families: 10

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada

Source Dataset Sampling Location

• Location Name: Coldwater, Ontario
• Coordinates
  • Lat. (^o): 44.58751
  • Long. (^o): -79.6655

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001733	Metagenome / Metatranscriptome	644	Y
F006623	Metagenome / Metatranscriptome	368	Y
F031872	Metagenome / Metatranscriptome	181	N
F033435	Metagenome / Metatranscriptome	177	N
F039641	Metagenome / Metatranscriptome	163	N
F042901	Metagenome / Metatranscriptome	157	Y
F049628	Metagenome / Metatranscriptome	146	N
F065785	Metagenome / Metatranscriptome	127	Y
F066786	Metagenome / Metatranscriptome	126	N
F097357	Metagenome / Metatranscriptome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0157140_1000003413	F066786	N/A	MMSMWLDTTKGLNMDEKIELKWKCGHTATFTFGYSHHELKAKMRLMASTLNICDVCQAKLIADSEWTHVQLMLEPKQVTLTGSEKQIAWARSIRTAKYEALALVLDCLREAHRTRQDEWSAIAQAIKPVVADVSIWRSYTQSGAIIERRNINWISSFRNALSRAGLHLGGLV*
Ga0157140_1000003414	F065785	AGGA	MDTKIKLTCTECHRPNSVPYGRGFHICSICSGRELRAYKRKQMQSRIQTIGGFVVVVLAVWTACMMASDWNTPNSADHRVHQAMQARD*
Ga0157140_1000003421	F049628	GGA	MKFEEVIQPLMHGKPITRASWDHELYIRYADIFEAFVMHTGGESKTLQGLTLDPESMFADDWMHGEFHPVKDEIKWTQTKS*
Ga0157140_1000003429	F039641	N/A	MIPAQYATALKNAITNYAYADRVQIWRAVNQADGIGGIGQHWIQVAEIRATITNTGDSEAVVGGMIEIGGSWTLTCSPDLEVKSNDRIYTSGNPQNLAPYYEVIGSDYGHSNAVSQTIGLRYRSNG*
Ga0157140_1000003431	F001733	AGAAGG	MNSISIKRLVVVVIVAFVAAFTSVFGDGIRTAQAQDIAELGAVMALYGSKAVAAGVSAAVSSVLAFLTMPFKGVEANSLKVGK*
Ga0157140_1000003432	F006623	AGGTGG	MNLQNYRLEPNPNVPGDWIVFGDIYDNEGNLLGTFGENGTSIFGWWALQDAQFQQGYSNQFAVIMAQEIVAGTAE*
Ga0157140_1000003436	F031872	GGA	MVESLVVDEWIYDTLTADATLQGLLAVDNRAPSYQQGIYLYMAPEQDPISLRQPQVPYIVVRHTDGGQEDTQSMCGGRIVTSSVHQVWCWDTQSGAVSMARIKGIVDRIDTLLNKQSVNTTTAVFFLNRTSVNSSVDVSQDGRVDNGISLVFVATITPEV*
Ga0157140_1000003438	F033435	AGGA	MSSIFDNIPKLDGRPNHVVDIERFIGAPGTITFREPKAADLFPRPEVEKMLKIAFPEFPAQMLQILMIMARCYVVQPGDGEINPARRFAQLARDRSDIYLYVVGEFAKAFPIDIEQAVDEVPND*
Ga0157140_1000003439	F097357	AGG	VAQKILYNSVRHLKRHPRETDLTLEEFAEVAWAGEVWENQIVEIVKAVMSVLAKRTI*
Ga0157140_100000347	F042901	GGA	MARKPAENKPTIERVEEKQEGLLWLLKASEHEILERLNAEDAVIFIHPALDGVVSFRIEENPAHDQKVVHVWR*