Scaffold Ga0157137_100027

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0157137_100027

Scaffold Ga0157137_100027

Overview

Basic Information
Taxon OID	3300012286 Open in IMG/M
Scaffold ID	Ga0157137_100027 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Ausable River, Ontario, Canada - S47
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Molecular Research LP (MR DNA)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	8749
Total Scaffold Genes	19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	13 (68.42%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada

Source Dataset Sampling Location
Location Name	Ailsa Craig, Ontario
Coordinates	Lat. (^o)	43.22713	Long. (^o)	-81.5225	Alt. (m)		Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F030765	Metagenome	184	Y
F034573	Metagenome	174	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0157137_10002710	F034573	AGGAG	MYKITKAVTKTKEEKIAEQIGKLLSDFHLDLEQVGVYMSRDLPYLVFRRALEVLESAQFQLDTVEQKRIQYNHDRLF*
Ga0157137_1000273	F030765	N/A	MNEKQFDEEFDLEETTKRIVDRAKAEVKNRYGNKKRHRQ*

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.