Scaffold Ga0118226_106850

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0118226_106850

Scaffold Ga0118226_106850

Overview

Basic Information
Taxon OID	3300012278 Open in IMG/M
Scaffold ID	Ga0118226_106850 Open in IMG/M
Source Dataset Name	Human skin bacterial and viral communities - University of Pennsylvania - MG100513
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Pennsylvania
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	840
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Skin → Unclassified → Unclassified → Human Skin → Human Skin Bacterial And Viral Communities - University Of Pennsylvania

Source Dataset Sampling Location
Location Name
Coordinates	Lat. (^o)		Long. (^o)		Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F018385	Metagenome	235	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0118226_1068501	F018385	N/A	MAEYENQWGPYKEHSIEKDRDPVLDDPIIYGVNTKHFTVTVYSQDGRVNKYWNARILKDDLGYCRIACPRDGKILCFNWVHWTTYMFTHDGLNELVFMPGSSRKTISRLYYEEVK*

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