3300012278: Human skin bacterial and viral communities - University of Pennsylvania - MG100513

Overview

Basic Information

• IMG/M Taxon OID: 3300012278
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0118646 | Gp0138163 | Ga0118226
• Sample Name: Human skin bacterial and viral communities - University of Pennsylvania - MG100513
• Sequencing Status: Permanent Draft
• Sequencing Center: University of Pennsylvania
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 36091330
• Sequencing Scaffolds: 3
• Novel Protein Genes: 3
• Associated Families: 3

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	3

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Skin Bacterial And Viral Communities - University Of Pennsylvania
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Skin → Unclassified → Unclassified → Human Skin → Human Skin Bacterial And Viral Communities - University Of Pennsylvania

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Coordinates
  • Lat. (^o): N/A
  • Long. (^o): N/A
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018385	Metagenome	235	Y
F036281	Metagenome	170	N
F051214	Metagenome	144	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0118226_106850	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	840
Ga0118226_114623	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	568
Ga0118226_117103	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	523

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0118226_106850	Ga0118226_1068501	F018385	MAEYENQWGPYKEHSIEKDRDPVLDDPIIYGVNTKHFTVTVYSQDGRVNKYWNARILKDDLGYCRIACPRDGKILCFNWVHWTTYMFTHDGLNELVFMPGSSRKTISRLYYEEVK*
Ga0118226_114623	Ga0118226_1146232	F051214	MPGKIVAHDTHIRIDTEFIELKDCFEAFRRGVEYREKNDVDDILVICNAPDIIEYQLKNGDSFVVTYDPIHRIIVMRVFLHDEDITIKPIYIYNNREYQIACEFLRQVMHDKIDLKDEWIA*
Ga0118226_117103	Ga0118226_1171031	F036281	YELRMQYLAKLKETDGVMLPTFIYRNKELFVTEFKPTCDDQWIMYMTNAEGLITKMRIKNGDLMSNGSVLFLAEERKTYNAEEYYDYWSAREGKPAPFFYESRQYHVKSFMRVPGSTDLWITAERETGHWYTFRMSDDQKSKFTRHTMTNEKGHQSYDWVLENVEWAADTIRYF