Scaffold Ga0126329_10387363

Overview

Basic Information

• Taxon OID: 3300012273
• Scaffold ID: Ga0126329_10387363
• Source Dataset Name: Marine gutless worms symbiont microbial communities from Oahu, Hawaii - Inanidrilus sp. 2 OAHU.JWI-85 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 576
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → Cytophagaceae → Candidatus Nephrothrix → unclassified Candidatus Nephrothrix → Candidatus Nephrothrix sp. EaCA (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Annelida → Digestive System → Unclassified → Unclassified → Marine Gutless Worms → Marine Gutless Worms Symbiont Microbial Communities From Various Locations

Source Dataset Sampling Location

• Location Name: Hawaii, USA
• Coordinates
  • Lat. (^o): 21.3935
  • Long. (^o): -157.7156
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001058	Metagenome	790	Y
F003194	Metagenome	501	Y
F076708	Metagenome	117	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0126329_103873631	F003194	GAGG	MTKSSGPRTEPWGTPQEDVYQEDRSVPHLTRKQRDDRYDLNQLRTKPWIPDQDERRVIKMSWSIVSKAAERSSRQRHDTFCDPIALM
Ga0126329_103873632	F076708	GAG	VSRKEAKKELSVICVEVMVQGTRGNEGTERGGVHDEE*
Ga0126329_103873633	F001058	N/A	MTENLLTLNTSKTEFLLIGLSKQLAKINNSSLTTTHSARNLGFIFDEHLTFSD