Scaffold Ga0137378_11053380

Overview

Basic Information

• Taxon OID: 3300012210
• Scaffold ID: Ga0137378_11053380
• Source Dataset Name: Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 728
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 39.5673
  • Long. (^o): -123.4758

Associated Families

Family	Category	Number of Sequences	3D Structure?
F046226	Metagenome	151	Y
F047542	Metagenome / Metatranscriptome	149	Y
F051821	Metagenome	143	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0137378_110533802	F046226	GGA	VITAVRSPLRSLGAILFAALLALSLIASTVDALAATPLGDRGGNSSETENLREFFHGRGITWE*
Ga0137378_110533803	F047542	AGGGGG	MKNTIKRLAFAAMLGLSLLASTNSAFAKDIRSGRETAWTDEGPVPTLPGGVTWENTLDPFGVTWEE*
Ga0137378_110533804	F051821	N/A	VVVEAFIKTVVGERRKSARGAQSPHEQVYQQAVEAVRVSL*