Scaffold Ga0137382_10033879

Overview

Basic Information

• Taxon OID: 3300012200
• Scaffold ID: Ga0137382_10033879
• Source Dataset Name: Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3078
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 39.5673
  • Long. (^o): -123.4758

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012170	Metagenome / Metatranscriptome	283	Y
F077127	Metagenome / Metatranscriptome	117	Y
F089248	Metagenome / Metatranscriptome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0137382_100338794	F077127	N/A	MLSWIWIPVLYVLAFSLFGWLGGIPAAGDAIARWGRETADRRRCAVSPSS*
Ga0137382_100338796	F012170	GGA	MATRTPLRDYERSRPEPSHGLLERAEEWAEETSLAPEGEPEEGVPWHAVALLLGALALLIGVEITLAFGIAKLATGHAY*
Ga0137382_100338797	F089248	AGG	MRVRILTAFSVVLLLSVGIATAAAARKQRFPASQQLCESYGGTFSTKENSSFFAPFYKKQGVLWTCNSYSGGSIASEAFVQSCASDGGQATSTLDSGFATCWKNQPF*