Scaffold Ga0137383_10029261

Overview

Basic Information

• Taxon OID: 3300012199
• Scaffold ID: Ga0137383_10029261
• Source Dataset Name: Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3858
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 39.5673
  • Long. (^o): -123.4758

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000150	Metagenome / Metatranscriptome	1910	Y
F015515	Metagenome / Metatranscriptome	254	Y
F075172	Metagenome / Metatranscriptome	119	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0137383_100292613	F015515	AGGAGG	MSSYASYCQDQGIDCARRARLARSPEVATYWRSLGFRWLRLAEQSEGTGGALGRGSEEVEASSLHCSDLERETTHAKANADARSL*
Ga0137383_100292616	F075172	N/A	MRPEYLSKKLASPIPTKDVGTLRTIQQGCEYMAAISKEREQRRHWQQVRELIDQEADVDAVS*
Ga0137383_100292617	F000150	GGCGG	MSITTYLDDFDADLETKTVLGVALERTRVSLGLDKFANGIIARRIVELAKAGERNPDLLSEGAIEKLRGHLYGD*