Metagenome / Metatranscriptome Family F075172

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F075172
Family Type	Metagenome / Metatranscriptome
Number of Sequences	119
Average Sequence Length	52 residues
Representative Sequence	MLRPAYLSKKLTPPIPTKDGGTLRTILEACEYMAAIGKERELRPHWQQVR
Number of Associated Samples	99
Number of Associated Scaffolds	119

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	38.14 %
% of genes near scaffold ends (potentially truncated)	86.55 %
% of genes from short scaffolds (< 2000 bps)	92.44 %
Associated GOLD sequencing projects	93
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.67

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (70.588 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (22.689 % of family members)
Environment Ontology (ENVO)	Unclassified (35.294 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (47.059 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 34.62% β-sheet: 14.10% Coil/Unstructured: 51.28%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.67
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.67
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 119 Family Scaffolds
PF00126	HTH_1	4.20
PF04392	ABC_sub_bind	2.52
PF01042	Ribonuc_L-PSP	1.68
PF00817	IMS	0.84
PF01068	DNA_ligase_A_M	0.84
PF07813	LTXXQ	0.84
PF01548	DEDD_Tnp_IS110	0.84
PF04311	DUF459	0.84
PF02518	HATPase_c	0.84
PF13533	Biotin_lipoyl_2	0.84
PF13517	FG-GAP_3	0.84
PF02634	FdhD-NarQ	0.84
PF00872	Transposase_mut	0.84
PF13518	HTH_28	0.84
PF02371	Transposase_20	0.84
PF00027	cNMP_binding	0.84
PF13439	Glyco_transf_4	0.84
PF00816	Histone_HNS	0.84
PF02211	NHase_beta	0.84

COG ID	Name	Functional Category	% Frequency in 119 Family Scaffolds
COG3678	Periplasmic chaperone Spy, Spy/CpxP family	Posttranslational modification, protein turnover, chaperones [O]	3.36
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	2.52
COG0251	Enamine deaminase RidA/Endoribonuclease Rid7C, YjgF/YER057c/UK114 family	Defense mechanisms [V]	1.68
COG3547	Transposase	Mobilome: prophages, transposons [X]	1.68
COG0389	Nucleotidyltransferase/DNA polymerase DinP involved in DNA repair	Replication, recombination and repair [L]	0.84
COG1423	ATP-dependent RNA circularization protein, DNA/RNA ligase (PAB1020) family	Replication, recombination and repair [L]	0.84
COG1526	Formate dehydrogenase assembly factor FdhD, a sulfurtransferase	Energy production and conversion [C]	0.84
COG1793	ATP-dependent DNA ligase	Replication, recombination and repair [L]	0.84
COG2845	Peptidoglycan O-acetyltransferase, SGNH hydrolase family	Cell wall/membrane/envelope biogenesis [M]	0.84
COG2916	DNA-binding protein H-NS	Transcription [K]	0.84
COG3328	Transposase (or an inactivated derivative)	Mobilome: prophages, transposons [X]	0.84

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	70.59 %
Unclassified	root	N/A	29.41 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	70.59 %
Unclassified	root	N/A	29.41 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	70.59 %
Unclassified	root	N/A	29.41 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	65.55 %
Unclassified	root	N/A	29.41 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.84 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	63.03 %
Unclassified	root	N/A	29.41 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	0.84 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	29.41 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	16.81 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	6.72 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.84 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	29.41 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	15.97 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	2.52 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	0.84 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.84 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	29.41 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	15.97 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2.52 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	0.84 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.84 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	29.41 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	15.97 %
unclassified Bradyrhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium	0.84 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	0.84 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.84 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	29.41 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	15.97 %
Bradyrhizobium sp. STM 3809	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. STM 3809	0.84 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	0.84 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.84 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000156\|NODE_c0465143	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	911	Open in IMG/M
3300004153\|Ga0063455_101466776	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	530	Open in IMG/M
3300005172\|Ga0066683_10217105	All Organisms → cellular organisms → Bacteria → Proteobacteria	1182	Open in IMG/M
3300005179\|Ga0066684_10298651	All Organisms → cellular organisms → Bacteria → Proteobacteria	1069	Open in IMG/M
3300005180\|Ga0066685_10263710	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1190	Open in IMG/M
3300005330\|Ga0070690_100987360	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	663	Open in IMG/M
3300005332\|Ga0066388_100555405	All Organisms → cellular organisms → Bacteria	1777	Open in IMG/M
3300005332\|Ga0066388_102159880	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	1003	Open in IMG/M
3300005332\|Ga0066388_105123377	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	665	Open in IMG/M
3300005332\|Ga0066388_106975307	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	568	Open in IMG/M
3300005363\|Ga0008090_15271121	Not Available	565	Open in IMG/M
3300005445\|Ga0070708_100351256	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1390	Open in IMG/M
3300005459\|Ga0068867_101821009	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	573	Open in IMG/M
3300005552\|Ga0066701_10508011	Not Available	745	Open in IMG/M
3300005554\|Ga0066661_10416756	Not Available	823	Open in IMG/M
3300005574\|Ga0066694_10016456	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3216	Open in IMG/M
3300005713\|Ga0066905_100785794	Not Available	824	Open in IMG/M
3300005713\|Ga0066905_101721170	Not Available	576	Open in IMG/M
3300005764\|Ga0066903_107998465	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	542	Open in IMG/M
3300006046\|Ga0066652_100558506	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1073	Open in IMG/M
3300006175\|Ga0070712_100682640	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	874	Open in IMG/M
3300006196\|Ga0075422_10416769	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	597	Open in IMG/M
3300006854\|Ga0075425_101598403	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	735	Open in IMG/M
3300006953\|Ga0074063_13993650	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	804	Open in IMG/M
3300009012\|Ga0066710_104597620	Not Available	516	Open in IMG/M
3300010046\|Ga0126384_12014705	Not Available	552	Open in IMG/M
3300010047\|Ga0126382_12036722	Not Available	547	Open in IMG/M
3300010358\|Ga0126370_10744999	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	867	Open in IMG/M
3300010359\|Ga0126376_10488085	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1137	Open in IMG/M
3300010366\|Ga0126379_10875613	Not Available	1000	Open in IMG/M
3300010398\|Ga0126383_10601141	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1171	Open in IMG/M
3300010863\|Ga0124850_1041264	Not Available	1467	Open in IMG/M
3300012096\|Ga0137389_11800478	Not Available	508	Open in IMG/M
3300012198\|Ga0137364_10643954	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	799	Open in IMG/M
3300012198\|Ga0137364_11237742	Not Available	558	Open in IMG/M
3300012199\|Ga0137383_10029261	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3858	Open in IMG/M
3300012199\|Ga0137383_10884840	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	652	Open in IMG/M
3300012200\|Ga0137382_10671549	Not Available	742	Open in IMG/M
3300012207\|Ga0137381_10551103	All Organisms → cellular organisms → Bacteria	1005	Open in IMG/M
3300012208\|Ga0137376_10720427	Not Available	860	Open in IMG/M
3300012209\|Ga0137379_10700282	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	919	Open in IMG/M
3300012209\|Ga0137379_11061924	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	715	Open in IMG/M
3300012210\|Ga0137378_10068024	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3229	Open in IMG/M
3300012210\|Ga0137378_10618840	Not Available	993	Open in IMG/M
3300012210\|Ga0137378_11869273	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	503	Open in IMG/M
3300012211\|Ga0137377_10066296	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	3372	Open in IMG/M
3300012211\|Ga0137377_11826912	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	527	Open in IMG/M
3300012211\|Ga0137377_11862396	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	520	Open in IMG/M
3300012212\|Ga0150985_115484196	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1132	Open in IMG/M
3300012351\|Ga0137386_10363197	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1042	Open in IMG/M
3300012354\|Ga0137366_10343266	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1093	Open in IMG/M
3300012357\|Ga0137384_10268909	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1420	Open in IMG/M
3300012358\|Ga0137368_10018641	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	6662	Open in IMG/M
3300012359\|Ga0137385_11088642	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	658	Open in IMG/M
3300012917\|Ga0137395_10974877	Not Available	609	Open in IMG/M
3300012971\|Ga0126369_10717349	Not Available	1078	Open in IMG/M
3300012977\|Ga0134087_10498365	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	612	Open in IMG/M
3300012984\|Ga0164309_10059322	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2257	Open in IMG/M
3300014154\|Ga0134075_10354789	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. STM 3809	643	Open in IMG/M
3300014969\|Ga0157376_12371749	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	570	Open in IMG/M
3300015356\|Ga0134073_10381358	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	526	Open in IMG/M
3300015371\|Ga0132258_12397513	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1322	Open in IMG/M
3300016270\|Ga0182036_11146420	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	645	Open in IMG/M
3300016270\|Ga0182036_11242632	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	620	Open in IMG/M
3300016319\|Ga0182033_10538668	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1008	Open in IMG/M
3300016422\|Ga0182039_11098793	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	716	Open in IMG/M
3300016445\|Ga0182038_10743545	Not Available	857	Open in IMG/M
3300016445\|Ga0182038_11693154	Not Available	570	Open in IMG/M
3300018055\|Ga0184616_10369979	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	539	Open in IMG/M
3300018469\|Ga0190270_10794550	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	952	Open in IMG/M
3300020579\|Ga0210407_10314625	Not Available	1223	Open in IMG/M
3300021478\|Ga0210402_11140561	Not Available	707	Open in IMG/M
3300021560\|Ga0126371_11910084	Not Available	713	Open in IMG/M
3300022883\|Ga0247786_1136223	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	547	Open in IMG/M
3300025915\|Ga0207693_11124069	Not Available	596	Open in IMG/M
3300025972\|Ga0207668_11009379	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	744	Open in IMG/M
3300026343\|Ga0209159_1193720	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	670	Open in IMG/M
3300027874\|Ga0209465_10263531	Not Available	863	Open in IMG/M
3300028047\|Ga0209526_10161791	All Organisms → cellular organisms → Bacteria	1564	Open in IMG/M
3300028796\|Ga0307287_10266638	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	648	Open in IMG/M
3300031545\|Ga0318541_10781512	Not Available	533	Open in IMG/M
3300031546\|Ga0318538_10574466	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	611	Open in IMG/M
3300031564\|Ga0318573_10254536	All Organisms → cellular organisms → Bacteria	936	Open in IMG/M
3300031573\|Ga0310915_10292411	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1150	Open in IMG/M
3300031679\|Ga0318561_10405289	All Organisms → cellular organisms → Bacteria	749	Open in IMG/M
3300031680\|Ga0318574_10412100	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	790	Open in IMG/M
3300031744\|Ga0306918_10328223	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1183	Open in IMG/M
3300031744\|Ga0306918_11034676	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	637	Open in IMG/M
3300031744\|Ga0306918_11336680	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	550	Open in IMG/M
3300031777\|Ga0318543_10506491	Not Available	541	Open in IMG/M
3300031780\|Ga0318508_1183940	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	597	Open in IMG/M
3300031805\|Ga0318497_10337794	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	840	Open in IMG/M
3300031821\|Ga0318567_10550446	Not Available	655	Open in IMG/M
3300031860\|Ga0318495_10210009	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	876	Open in IMG/M
3300031879\|Ga0306919_10230927	Not Available	1386	Open in IMG/M
3300031890\|Ga0306925_10018155	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	6964	Open in IMG/M
3300031893\|Ga0318536_10201374	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1013	Open in IMG/M
3300031897\|Ga0318520_10937513	Not Available	546	Open in IMG/M
3300031910\|Ga0306923_11595631	Not Available	678	Open in IMG/M
3300031912\|Ga0306921_10204057	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2316	Open in IMG/M
3300031912\|Ga0306921_11753225	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	669	Open in IMG/M
3300031912\|Ga0306921_12254482	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	572	Open in IMG/M
3300031945\|Ga0310913_11167649	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	536	Open in IMG/M
3300031946\|Ga0310910_10474834	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	993	Open in IMG/M
3300031947\|Ga0310909_10873823	Not Available	739	Open in IMG/M
3300031959\|Ga0318530_10375107	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	589	Open in IMG/M
3300032025\|Ga0318507_10133609	All Organisms → cellular organisms → Bacteria → Proteobacteria	1054	Open in IMG/M
3300032035\|Ga0310911_10727416	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	574	Open in IMG/M
3300032052\|Ga0318506_10465438	Not Available	560	Open in IMG/M
3300032059\|Ga0318533_10635251	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	783	Open in IMG/M
3300032063\|Ga0318504_10519599	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	571	Open in IMG/M
3300032068\|Ga0318553_10346509	Not Available	778	Open in IMG/M
3300032068\|Ga0318553_10488427	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	645	Open in IMG/M
3300032076\|Ga0306924_12396092	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	532	Open in IMG/M
3300032180\|Ga0307471_102015407	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	724	Open in IMG/M
3300032180\|Ga0307471_102299570	Not Available	680	Open in IMG/M
3300032261\|Ga0306920_103582608	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	572	Open in IMG/M
3300033290\|Ga0318519_10134934	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1366	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	93.28%
Host-Associated	Host-Associated	5.88%
Engineered	Engineered	0.84%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	92.44%
Plants	Host-Associated → Plants	5.88%
Aquatic	Environmental → Aquatic	0.84%
Solid Waste	Engineered → Solid Waste	0.84%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	92.44%
Rhizosphere	Host-Associated → Plants → Rhizosphere	3.36%
Rhizoplane	Host-Associated → Plants → Rhizoplane	2.52%
Sediment	Environmental → Aquatic → Sediment	0.84%
Grass	Engineered → Solid Waste → Grass	0.84%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	79.83%
Loam	Environmental → Terrestrial → Soil → Loam	12.61%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	2.52%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.68%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.84%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	0.84%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.84%
Composting	Engineered → Solid Waste → Grass → Composting	0.84%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	38.66%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	31.93%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	8.40%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	7.56%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	3.36%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	2.52%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.68%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.84%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.84%
Tropical Rainforest	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest	0.84%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.84%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	0.84%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.84%
Bioreactor	Engineered → Solid Waste → Grass → Composting → Bioreactor	0.84%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	22.69%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	18.49%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	14.29%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	7.56%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	7.56%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	6.72%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.52%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	2.52%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.52%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.68%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	1.68%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.84%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.84%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.84%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.84%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.84%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	0.84%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.84%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.84%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	0.84%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.84%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.84%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.84%
Sugar Cane Bagasse Incubating Bioreactor	Engineered → Solid Waste → Grass → Composting → Bioreactor → Sugar Cane Bagasse Incubating Bioreactor	0.84%
Tropical Rainforest Soil	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest → Tropical Rainforest Soil	0.84%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000156	Sugar cane bagasse incubating bioreactor microbial communities from Sao Carlos, Brazil, that are aerobic and semianaerobic	Engineered	Open in IMG/M
3300004153	Grasslands soil microbial communities from Hopland, California, USA (version 2)	Environmental	Open in IMG/M
3300005172	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_132	Environmental	Open in IMG/M
3300005179	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_133	Environmental	Open in IMG/M
3300005180	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_134	Environmental	Open in IMG/M
3300005330	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005363	Tropical rainforest soil microbial communities from the Amazon Forest, Brazil, analyzing deforestation - Metatranscriptome F II A100 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005459	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2	Host-Associated	Open in IMG/M
3300005552	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_150	Environmental	Open in IMG/M
3300005554	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_110	Environmental	Open in IMG/M
3300005574	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_143	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006046	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006196	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006953	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHMB (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300010863	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (PacBio error correction)	Environmental	Open in IMG/M
3300012096	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaG	Environmental	Open in IMG/M
3300012198	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaG	Environmental	Open in IMG/M
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental	Open in IMG/M
3300012200	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaG	Environmental	Open in IMG/M
3300012207	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaG	Environmental	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012209	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaG	Environmental	Open in IMG/M
3300012210	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG	Environmental	Open in IMG/M
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012351	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_100_16 metaG	Environmental	Open in IMG/M
3300012354	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_60_16 metaG	Environmental	Open in IMG/M
3300012357	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_60_16 metaG	Environmental	Open in IMG/M
3300012358	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_100_16 metaG	Environmental	Open in IMG/M
3300012359	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_80_16 metaG	Environmental	Open in IMG/M
3300012917	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk2.16 metaG	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300012977	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_20cm_5_24_1 metaG	Environmental	Open in IMG/M
3300012984	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_247_MG	Environmental	Open in IMG/M
3300014154	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09212015	Environmental	Open in IMG/M
3300014969	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG	Host-Associated	Open in IMG/M
3300015356	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_5_24_1 metaG	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300018055	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_90_coex	Environmental	Open in IMG/M
3300018469	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300022883	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S066-202C-4	Environmental	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025972	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026343	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_144 (SPAdes)	Environmental	Open in IMG/M
3300027874	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio (SPAdes)	Environmental	Open in IMG/M
3300028047	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300028796	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_141	Environmental	Open in IMG/M
3300031545	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26	Environmental	Open in IMG/M
3300031546	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f23	Environmental	Open in IMG/M
3300031564	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f21	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031679	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f23	Environmental	Open in IMG/M
3300031680	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f22	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031777	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f24	Environmental	Open in IMG/M
3300031780	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f21	Environmental	Open in IMG/M
3300031805	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f23	Environmental	Open in IMG/M
3300031821	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f20	Environmental	Open in IMG/M
3300031860	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f25	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031893	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f28	Environmental	Open in IMG/M
3300031897	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f16	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031945	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX082	Environmental	Open in IMG/M
3300031946	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172	Environmental	Open in IMG/M
3300031947	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H	Environmental	Open in IMG/M
3300031959	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f24	Environmental	Open in IMG/M
3300032025	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f20	Environmental	Open in IMG/M
3300032035	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF170	Environmental	Open in IMG/M
3300032052	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f19	Environmental	Open in IMG/M
3300032059	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27	Environmental	Open in IMG/M
3300032063	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f17	Environmental	Open in IMG/M
3300032068	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f21	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300033290	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f15	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
NODE_04651431	3300000156	Sugar Cane Bagasse Incubating Bioreactor	MLSPTYLTRKLTSPIPTKDGGTLSTIGEACEYMAAIGKERELRPHWQRVREL
Ga0063455_1014667762	3300004153	Soil	MFHPAYLSRKLTSPLPTKDGGTLRTIGEACEYIAAVGEERESRLHWQRVRELMLE
Ga0066683_102171052	3300005172	Soil	MFASRVSLEKLTPPIPTKDGGTLRTILQACEYMAAIGKERELRPHWQQVRELMLQETDVGAVS
Ga0066684_102986513	3300005179	Soil	MLLADYLSRNLTPPIPTKDGGTLRTIGEACEYMAAIGEEREQRRH*
Ga0066685_102637101	3300005180	Soil	MLLPDYLSRNLTPPIPTKDGGTLRTIGEACEYMAAIGKEREQRRHWQQVRELMLQEADVAAVSR
Ga0070690_1009873601	3300005330	Switchgrass Rhizosphere	MFRPAYLSRKLTSPLPTKDGGTLRTVGEACEYMAAIGKERELRL
Ga0066388_1005554052	3300005332	Tropical Forest Soil	LTRPLPTKDGGTLRTFTLRTIQDVCDYMAAIGKEREQRWHWQQVRQLILEEADAAVVS*
Ga0066388_1021598801	3300005332	Tropical Forest Soil	MLRPAYLSKKLNPPIPTKDGGTLRTIQEGCEYMAAISREREQRRHWQQVRELI
Ga0066388_1051233773	3300005332	Tropical Forest Soil	MLSATYLTRKLTSPIPTKDGGTLSTIGEACEYMAAIGKERELR
Ga0066388_1069753071	3300005332	Tropical Forest Soil	MLRPAYLSKKLSPPISTKDGGTLRTILEACEYMAAIGNERELR
Ga0008090_152711211	3300005363	Tropical Rainforest Soil	MHPEYLTEKLTSPIPTKDGGTLRTIQEGCEYMAAISKGREQRRHWQQVRELIDQEA
Ga0070708_1003512564	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	MDNELSAVLPPAYLSKKLTPPTPTKDGGTLRTILEACEYMAA
Ga0068867_1018210092	3300005459	Miscanthus Rhizosphere	MFRPAYLSRKLTSPLPSKDGGTLRTVGEACEYMAAIGKEREL
Ga0066701_105080113	3300005552	Soil	MLLPDYLSRNLTPPIPTKDGGTLRTIGEACEYMAAIGEEREQRRH*
Ga0066661_104167561	3300005554	Soil	MLRPEYLSKKLTPPIPTKDGGTPRTIQDACDYMAAIGKERE
Ga0066694_100164566	3300005574	Soil	MLRPDYLFRNLTPPIPTKDGGTLRTIGEACEYMAAIGKEREQRRHWQQVREL
Ga0066905_1007857941	3300005713	Tropical Forest Soil	MLRPAYLSKKLTPPISTKDGGTLRTILEACEYIAA
Ga0066905_1017211701	3300005713	Tropical Forest Soil	MLSPAYLSRKLTSAIPTKDGGTLRTIGEACEYMAA
Ga0066903_1079984652	3300005764	Tropical Forest Soil	MLSPAYLTRKLTSPIPTKDGGTLSTIGEACEYMAAIGKERELRPHWQRVRELMLQEADVAALSSRV
Ga0066652_1005585061	3300006046	Soil	MLSSAYLSRKLTSPIPTKDGGTLRTIGEACEYMAAIGKERELRRHWQQVRELMLQE
Ga0070712_1006826403	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	LRPAYLSQKLAGPLPTKDGGTLRTIRDAREYIASIGKERQERRHWQEVSKQILA
Ga0075422_104167691	3300006196	Populus Rhizosphere	MFRPAYLSRKLTSPLPTKDGGTLRTVGEACEYMAAIGKERELRLHWQRVREL
Ga0075425_1015984032	3300006854	Populus Rhizosphere	MLSPAYLSRKLTLPLPTKDGGTLRTIGEACEYMAAIGK
Ga0074063_139936502	3300006953	Soil	MLLPEYLSTKLTSPLPTKDGGTLRTIREACEYMAAIGKERARRLHWQRVREVMLQEA
Ga0066710_1045976201	3300009012	Grasslands Soil	MLRPDYLSRKLTPPIPTKDGGTLRTIGEACEYTAAIGKEREQRRHWQQVRELMLQEADVAAVSRRVRL
Ga0126384_120147052	3300010046	Tropical Forest Soil	MLSPAYLTRKLTSPIPTKDGGTLSTIGEACEYMAA
Ga0126382_120367222	3300010047	Tropical Forest Soil	MLSAYLTRKLTSPIPTKDGGTLSTIGEACEYMAAIGKER
Ga0126370_107449992	3300010358	Tropical Forest Soil	MLRPAYLSKKLTPPISTKDGGTLRTILEACEYMAAI
Ga0126376_104880852	3300010359	Tropical Forest Soil	MLSPTYLTRKLTSPIPTKDGGTLSTIGEACEYMAAIGKERELRPHWQRVRELMLQEADVA
Ga0126379_108756132	3300010366	Tropical Forest Soil	MLRPAYLSKKLNPPIPTKDGGALRTIQEGCGYMAAISREREQRRHWQQVRELIHQ
Ga0126383_106011411	3300010398	Tropical Forest Soil	MLRREYLFKKLTAPIPTKDRGTLRTIQEACEYMAAIGKERELRRHWQQVRELILQEADAAAVSWK
Ga0124850_10412641	3300010863	Tropical Forest Soil	MLPPAYLSRKLTSPLPTKDGGTLTTIGEACEYMAAIGPHWQRVRELMLQEADVAALSSRVRLAV
Ga0137389_118004781	3300012096	Vadose Zone Soil	MLRPAYLSQKLTPPIPTKDGGTLHTIQEAWEYMAAISKEREQRRHWQQVRKMILDEEANMAAVT
Ga0137364_106439541	3300012198	Vadose Zone Soil	MLSSAYLSRKLTSTLPTKDGGTLRTIGEACEYMAAIGKERE
Ga0137364_112377421	3300012198	Vadose Zone Soil	MRPEYLSKKLASPIPTKDSGTLRTIQQGCEYMAAISKEREQRRHWRQVRELIDQEADVDAVS*
Ga0137383_100292616	3300012199	Vadose Zone Soil	MRPEYLSKKLASPIPTKDVGTLRTIQQGCEYMAAISKEREQRRHWQQVRELIDQEADVDAVS*
Ga0137383_108848401	3300012199	Vadose Zone Soil	MLRPAYLSRKLTSPLPTKDGGTLRTIGEACEYMAAIGKERELRPH
Ga0137382_106715493	3300012200	Vadose Zone Soil	MLSSAYLSRKLTSPIPTKDGGTLRTIGEACAYMAAISKERELRPHWQRVRE
Ga0137381_105511031	3300012207	Vadose Zone Soil	MLPPAYLSKKLIPPLPTKDGGMLRTIREACEYMAAIGTERELRRHWQHM
Ga0137376_107204271	3300012208	Vadose Zone Soil	MLRPAYLSQKLTPPIPTKDGGTLHTIQEAWEYMAAISKEREQRRHWQQVRKMILDEEANMAAVTWQL
Ga0137379_107002822	3300012209	Vadose Zone Soil	MLSPAYLSRKLTSPLPTKDGGTLRTIGEACEYMAAIGKERELRPHWQRVRELML
Ga0137379_110619241	3300012209	Vadose Zone Soil	MLRPAYLSRKLTSPLPTKDGGTLRTIGEACEYMAAIGKERELRPHWQRVRELMLQEADV
Ga0137378_100680245	3300012210	Vadose Zone Soil	MRPEYLSKKLTSPIPTKDSGTLRTIQQGCEYMAAISKEREQRRHWRQVRELIDQEADVDAVS*
Ga0137378_106188402	3300012210	Vadose Zone Soil	MLRPDYLSRNLTPPIPTKDGGTLRTIGEACEYMAAIGEEREQRRH*
Ga0137378_118692731	3300012210	Vadose Zone Soil	MLRPAYLSRKLTSPLPTKDGGTLRTIGEACEYMAAIGKERELRPHWQRVRELMLEEADVA
Ga0137377_100662965	3300012211	Vadose Zone Soil	LSPLPYLSAMLRPAYLSRKLTSPLPTKDGGTLRTIGEACEYMAAIGKERELRPHWQRVRELMLQEADV
Ga0137377_118269121	3300012211	Vadose Zone Soil	MRPEYLSKKLASPIPTKDSGTLRTIQQECEYMAAISKEREQRRHWQQVRELIDQE
Ga0137377_118623961	3300012211	Vadose Zone Soil	MLSPAYLSRKLTSPLPTKDGGTLRTIGEACEYMAAIGKERELRPHWQRVRELMLQEADV
Ga0150985_1154841961	3300012212	Avena Fatua Rhizosphere	MLRPEYLSRKLTTPLPTKDGGTLRTIGETCEYMAAIGKERELRLHWQRVREVMLQEADEAAVTW
Ga0137386_103631973	3300012351	Vadose Zone Soil	MRPEYLSKKLASPIPTKDVGTLRTIQQGCEYMAAISKEREQRRHWRQVRELIDQEA
Ga0137366_103432663	3300012354	Vadose Zone Soil	MRPEYLSKKLASPIPTKDSGTLRTIQQGCEYMAAISKEREQRRHWQQVRELIDQEADVDAVS*
Ga0137384_102689091	3300012357	Vadose Zone Soil	MRPEYLSKKLASPIPTKDSGTLRTIQQGCEYMAAISKERGQRRHWQQVRELVEQEADV
Ga0137368_100186413	3300012358	Vadose Zone Soil	MRPEYLSKKLTSPIPTKDSGTLRTIQQGCEYMAAISKERDQRRHWRQVRELIDQEADVDAVS*
Ga0137385_110886422	3300012359	Vadose Zone Soil	LSPLPYLSAMLRPAYLSRKLTSPLPTKDGGTLRTIGEACEYMAAIGKERELR
Ga0137395_109748771	3300012917	Vadose Zone Soil	MLRPDYLSRNLTPPIPTKDGGTLRTIGEACEYMAAIGKERACLGDPQGAP
Ga0126369_107173492	3300012971	Tropical Forest Soil	MLRPAYLSKKLTPPVPTKDGGTLRTIQEACGYLAAIGEERELRRHWQHVR
Ga0126369_130217951	3300012971	Tropical Forest Soil	MHSEYLSEKLTSPIPTKDGGTLRTIREAWEYMTGVIRKRV
Ga0134087_104983652	3300012977	Grasslands Soil	MLLPDYLSRNLTPPIPTKDGGTLRTIGEACEYMAAIGKEREQRRHWQQVRELMLN
Ga0164309_100593223	3300012984	Soil	LQPPPYLFAMLISAYLSRKLTSPIPTKDGGTLRTIEEACKYMAAIGKERELRSHWQ
Ga0134075_103547891	3300014154	Grasslands Soil	MLLPDYLSRNLTPPIPTKDGGTLRTIGEACEYMAAIGKEREQR
Ga0157376_123717491	3300014969	Miscanthus Rhizosphere	MLRPEYLSRKLTSPLPTKDGGTLRTIGEACEYMAVIGKEREQRLHWQRVRE
Ga0134073_103813582	3300015356	Grasslands Soil	MLLPDYLSRNLTPPIPTKDGGTLRTIGEACEYMAAIGKEREQRRHWQQVRELMLQE
Ga0132258_123975132	3300015371	Arabidopsis Rhizosphere	MDNELSAALPPAYLSKKLTPPTPTKDGGTLRTILEACEYMAAIGKERKLRPHWRQVRELILQEADDMAAVSRGRIS*
Ga0182036_111464201	3300016270	Soil	MLRPAYLSKKLTPPISTKDGGTLRTILEACEYMAAIGKERELRPHW
Ga0182036_112426322	3300016270	Soil	MLSPAYLTRKLTSPIPTKDGGTLSTIGEACEYMAAIGKERELRPHWQRVRELMLQEADVAAL
Ga0182033_105386682	3300016319	Soil	MLRPAYLSKKLTPPISTKDGGTLRTILEACEYMAAIGKERALRPHW
Ga0182039_110987933	3300016422	Soil	MLRSGYLSKKLTPPIPTKDGGTLRTILEACEYMAAIG
Ga0182038_107435452	3300016445	Soil	MLPPAYLSKKLTSPIPTKDGGTLHTILEACEYMAAIGKERELRPHW
Ga0182038_116931541	3300016445	Soil	MLRPAYLSKKLNPPIPTKDGGTLRTIQEGCEYMAAISREREQRRHWQQVRELIH
Ga0184616_103699792	3300018055	Groundwater Sediment	MLRPEYLSRKLTTPLPTKDGGTLRTIGEACEYMAAIGKEREQRLH
Ga0190270_107945503	3300018469	Soil	MLRPEYLSRKLTTPLPTKDGGTLRTIGEACEYMAAIGKEREQRLHWQRV
Ga0210407_103146252	3300020579	Soil	MLRPAYLSKKLDRPIPTKDGGTLRTISEACDYMTAMGKERELRQRWQRSPS
Ga0210402_111405611	3300021478	Soil	MLRPAYLSKKLTPPIPTKDGGTLRTILEACEYMAAIGKERELRPHWQQVR
Ga0126371_119100842	3300021560	Tropical Forest Soil	MLRREYLFKKLTAPIPTKDGGTLRTIQEACDYMAAIGKERELRRHWRQVRELILQEADAAAV
Ga0247786_11362232	3300022883	Soil	MFRPAYLSRKLTSPLPTKDGGTLRTVGEACEYMAAIGKERELRLPW
Ga0207693_111240691	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	MLRPAYLSQKLAGPLPTKDGGTLRTIRDAREYIASIGKERQERRHWQEVSKQILA
Ga0207668_110093791	3300025972	Switchgrass Rhizosphere	MLRPEYLSRKLTSPLPTKDGGTLRTIGEACEYMAAIGKEREQRLHWQRVREVMLQEADEAAVTW
Ga0209159_11937202	3300026343	Soil	MLLPDYLSRNLTPPIPTKDGGTLRTIGEACEYMAAIGEEREQRRH
Ga0209465_102635311	3300027874	Tropical Forest Soil	MLSPTYLTRKLTSPIPTKDGGTLSTIGEACEYMAVIGKERELRPHWQRVRELMLQ
Ga0209526_101617913	3300028047	Forest Soil	MLRPAYLSKKLTPPIPTKDGGTLRTILQACEYMTTIGKERELRPHWHQVRELMLQEAEVAAV
Ga0307287_102666381	3300028796	Soil	MLRPEYLSRKLTSPLPTKDGGTLRTIGEACEYMAAIGKEREQRLHWQRVREVMLQES
Ga0318541_107815121	3300031545	Soil	MLHREYLFKKLTAPIPTKDGGTLRTIQEACEYVAAIGKERELRRHWQQVRELILQEADAAAVS
Ga0318538_105744661	3300031546	Soil	MLRPAYLSKKLTSPIPTKDGGTLRTILEACEYMAAIGKERELRPHWQQVRELMLQEADVAAVSWQV
Ga0318573_102545361	3300031564	Soil	MLRPAYLSKKLTSPIPTKDGGTLRTILEACEYMAAIGKERELR
Ga0310915_102924111	3300031573	Soil	MLRPAYLSKKLTPPIPTKDGGTLRTILEAYEYMATIGKERELRPHWHQVR
Ga0318561_104052892	3300031679	Soil	MLRPAYLSKKLTPPISTKDGGTLRTILEACEYMAAIGKERELRPHWQQI
Ga0318574_104121002	3300031680	Soil	MLRPAYLSKKLTPPIPTKDGGTLRTILEAYEYMATIGKERELRPHW
Ga0306918_103282233	3300031744	Soil	MLSPTYLTRKLTSPIPTKDGGTLSTIGEACEYMAAIGKERELRPHW
Ga0306918_110346762	3300031744	Soil	MLSPAYLTRKLTSPIPTKDGGTLSTIGEACEYIAAIGKER
Ga0306918_113366801	3300031744	Soil	MLSPAYLTRKLTSPIPTKDGGTLSTIGEACEYMAAIGKERELRPHW
Ga0318543_105064912	3300031777	Soil	MLRPAYLSKKLTPPIPTKDGGTLRTILEAYEYMATIG
Ga0318508_11839401	3300031780	Soil	MLSPTYLTKKLTSPIPTKDGGTLSTIGEACEYMAAIGKERELRPHWQRVR
Ga0318497_103377941	3300031805	Soil	MLSPTYLTRKLTSPIPTKDGGTLSTIGEACEYMAAIGKERELRPHWQRVRELMLQEADVAALSSRVRL
Ga0318567_105504461	3300031821	Soil	MLPPAYLSKKLTSPIPTKDGGTLHTILEACEYMAAIGKERELRPHWLQIRELMLQEPDVAAVSWKLR
Ga0318495_102100091	3300031860	Soil	MLSPTYLTRKLTSPIPTKDGGTLSTIGEACEYMAAIGKERELRPHWQRVRELMLQEA
Ga0306919_102309271	3300031879	Soil	MRPEYLCEKLASPIPTKDRGTLRTILEGCEYMAAISHEREQRRHWRQVRELIDQEADVDTVSWK
Ga0306925_100181557	3300031890	Soil	MLRPDYLSRNLTSPIPTKDGGTLPIEEACEYMAAIGKEREQRRHWQQVPELMLQEADVALRTL
Ga0318536_102013742	3300031893	Soil	LQWWLRPAYLSKRLTPPIPTKDGGTLRTILEACEYMAAIGKERELRPHWLQIRELMLQEPDVAAVSWKLRL
Ga0318520_109375131	3300031897	Soil	MLRPAYLSKKLTPPISTKDGGKLRTILEACEYMAAIG
Ga0306923_115956312	3300031910	Soil	MLPPAYLSKKLTSPIPTKDGGTLRTILEACEYMAAIGNERE
Ga0306921_102040575	3300031912	Soil	MLRPVYLSKKLTPPISTKDGGTLRTILEACEYMAAIG
Ga0306921_117532252	3300031912	Soil	MRPEYLCEKLASPIPTKDRGTLRTILEGCEYMVAISHEREQRRHWRQVRELIDQEADVD
Ga0306921_122544821	3300031912	Soil	MLRPAYLSKKLTPPISTKDGGTLRTILEACEYMAAIGKERELRPHWLQIRELMLQEADVA
Ga0310913_111676491	3300031945	Soil	MLSPAYLTRKLTSPIPTKDGGTLSTIGEACEYIAAIGKEREL
Ga0310910_104748342	3300031946	Soil	MLRPVYLSKKLTPPISTKDGGTLRTILEACEYMAAIGKEREL
Ga0310909_108738231	3300031947	Soil	MLRPAYLSKKLTPPISTKDGGTLRTILEACEYMAAIGKERELRPHWQQV
Ga0318530_103751071	3300031959	Soil	MLSPTYLTRKLTSPIPTKDGGTLSTIGEACEYMAAIGKERELRPHWQRVRELMLQEADVAALSSRIRLA
Ga0318507_101336093	3300032025	Soil	MLSSAYLSRKLTSPIPTKDGGTLSTIGEACEYMAAIGN
Ga0310911_107274162	3300032035	Soil	MLRPAYLSKKLTSPIPTKDGGTLRTILEACEYMAAIGKERELRPHWQQVRELMLQEADVA
Ga0318506_104654381	3300032052	Soil	MLRPAYLSKKLTSTIPTKDGGTLRTILEACEYMAAIGKERE
Ga0318533_106352511	3300032059	Soil	MLRPAYLSKKLTPPISTKDGGTLRTILEACEYMAAIGKE
Ga0318504_105195992	3300032063	Soil	MLRPAYLSKKLTSPIPTKDGGTLRTILEACEYMAAIGKERELRPHWQQVRELMLQEADVAAVS
Ga0318553_103465091	3300032068	Soil	MRPEYLCEKLASPIPTKDRGTLRTILEGCEYMVAISHEREQRRHWRQVREL
Ga0318553_104884272	3300032068	Soil	MLRPAYLSKKLTPPISTKDGGTLRTILEACEYMAAIGKERALRPHWQEVR
Ga0306924_123960922	3300032076	Soil	MLSPAYLTRKLTSPIPTKDGGTLSTIGEACEYIAAIGKERELRPHWQRVRELMLQEADVAALS
Ga0307471_1020154072	3300032180	Hardwood Forest Soil	MFSFAYLSRKLTSPIPTKDGGALRTIEEACKYIAAIGKERELRPHWQRVRELMLQE
Ga0307471_1022995701	3300032180	Hardwood Forest Soil	MLSSAYLSRKLTSPIPTKDGGTLHTIGEAYEYMAAIGKERELRPH
Ga0306920_1035826081	3300032261	Soil	MLRPAYLSKKLTPPISTKDGGKLRTILEACEYMAAIGKERELRPHWQQIRELMLQEADVAAVTWR
Ga0318519_101349341	3300033290	Soil	MLPPAYLSKKLTSPIPTKDGGTLRTILEACEYMAAIGKERELRPHWQQVRELMLQEP

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F075172

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences