Scaffold Ga0153922_1038222

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0153922_1038222

Scaffold Ga0153922_1038222

Overview

Basic Information
Taxon OID	3300012181 Open in IMG/M
Scaffold ID	Ga0153922_1038222 Open in IMG/M
Source Dataset Name	Attine ant fungus gardens microbial communities from New Jersey, USA - TSNJ006 MetaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1068
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens → Attine Ant Fungus Gardens Microbial Communities From Various Locations In Usa

Source Dataset Sampling Location
Location Name	USA: New Jersey, Brendon T. Byrne State Forest
Coordinates	Lat. (^o)	39.9181	Long. (^o)	-74.5218	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F008003	Metagenome / Metatranscriptome	341	Y
F031604	Metagenome / Metatranscriptome	182	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0153922_10382221	F008003	N/A	IFSDLASPAEAAAGTTNGSQGFAQAGNRCPFLGIML*
Ga0153922_10382224	F031604	N/A	QDQVKQCRKLAADAHDKNDREFWLRLAHRWEGLLRAQHHDGAGVETVQKLRFERPIFAKRRRAA*

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