Scaffold Ga0153961_1000948

Overview

Basic Information

• Taxon OID: 3300012139
• Scaffold ID: Ga0153961_1000948
• Source Dataset Name: Attine ant fungus gardens microbial communities from Florida, USA - TSFL045 MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7266
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (41.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Agaricales (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens → Attine Ant Fungus Gardens Microbial Communities From Various Locations In Usa

Source Dataset Sampling Location

• Location Name: USA: Florida, Withalacochee
• Coordinates
  • Lat. (^o): 28.571
  • Long. (^o): -82.2846

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001569	Metagenome	669	Y
F002577	Metagenome	546	Y
F019419	Metagenome	229	Y
F025891	Metagenome	199	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153961_10009481	F002577	GGAG	LEAVQIVVHHPIFLVVGSLFQTIDRVHFHVCREEVQPELLFKFSLGLDGENASVRFLTEYVFGPLGGTTSLEEHEGPEDPFLFVMELLWG*
Ga0153961_100094812	F025891	N/A	LLEGRSIRYPIWGAWASVYEVYVAVVTAATLLLELDAQVHD*
Ga0153961_10009482	F019419	N/A	MSMGTLIDRVVSRGFGMTRGGGARGNLAADNGRGQTETVLSDVEGAERDTDWKALFARHAWSILLAALYHVSGLVSAGHS*
Ga0153961_10009484	F001569	N/A	MVLEPGVAEDHALLPEVRDSEKHPFRVGFIMEDHIYHFRDLSSFVRGTVHIEHWYGARDVLGANTLYTDKIFIYEIACGSRVQKRFDRMYFASVSGTDFDREDNRRFVGIEGVGGESPG*