Scaffold Ga0154005_102463

Overview

Basic Information

• Taxon OID: 3300012061
• Scaffold ID: Ga0154005_102463
• Source Dataset Name: Attine ant fungus gardens microbial communities from Florida, USA - TSFL089 MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3002
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens → Attine Ant Fungus Gardens Microbial Communities From Various Locations In Usa

Source Dataset Sampling Location

• Location Name: USA: Florida, Lake Talquin State Forest
• Coordinates
  • Lat. (^o): 30.4649
  • Long. (^o): -84.3641

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000950	Metagenome	822	Y
F032889	Metagenome	178	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0154005_1024632	F032889	GAG	MLVSGFLSLDKIGDEDPDNNILSWADTTDPGNHQQAMVVAAILNNQDQYGDSDCEDTKT*
Ga0154005_1024634	F000950	GAG	MKLLEEDSDDSESPPEVVKVNSTSIEEIPDPIPPSGKGKGTPKLDFPLGL*