3300012061: Attine ant fungus gardens microbial communities from Florida, USA - TSFL089 MetaG

Overview

Basic Information

• IMG/M Taxon OID: 3300012061
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0121619 | Gp0175814 | Ga0154005
• Sample Name: Attine ant fungus gardens microbial communities from Florida, USA - TSFL089 MetaG
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 50099514
• Sequencing Scaffolds: 27
• Novel Protein Genes: 44
• Associated Families: 19

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes	7
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Agaricales → Agaricaceae → Leucoagaricus	2
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Agaricales → Agaricaceae → Leucoagaricus → Leucoagaricus leucothites	2
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Agaricales → Agaricaceae → Agaricus → Agaricus bisporus	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Agaricales	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetes incertae sedis → Polyporales	1
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae → Papilionoideae → 50 kb inversion clade → NPAAA clade → indigoferoid/millettioid clade → Phaseoleae → Glycine → Glycine subgen. Soja → Glycine max	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Agaricales → Omphalotaceae → Collybiopsis → Collybiopsis confluens	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Agaricales → Omphalotaceae → Gymnopus → Gymnopus luxurians	1
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → BOP clade → Oryzoideae → Oryzeae → Oryzinae → Oryza	1
Not Available	9

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Attine Ant Fungus Gardens Microbial Communities From Various Locations In Usa
• Type: Host-Associated
• Taxonomy: Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens → Attine Ant Fungus Gardens Microbial Communities From Various Locations In Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Fungus → Fungus corpus

Location Information

• Location: USA: Florida, Lake Talquin State Forest
• Coordinates
  • Lat. (^o): 30.4649
  • Long. (^o): -84.3641
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000950	Metagenome	822	Y
F001430	Metagenome	696	Y
F002822	Metagenome	527	Y
F008983	Metagenome	324	Y
F030951	Metagenome	183	Y
F032889	Metagenome	178	Y
F044940	Metagenome	153	Y
F048028	Metagenome	148	Y
F048125	Metagenome	148	Y
F048691	Metagenome	147	Y
F050816	Metagenome	144	Y
F054481	Metagenome	139	Y
F061597	Metagenome / Metatranscriptome	131	Y
F065291	Metagenome	127	Y
F078055	Metagenome	116	Y
F079421	Metagenome	115	Y
F081965	Metagenome	113	Y
F083491	Metagenome	112	Y
F083492	Metagenome	112	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0154005_100060	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes	65479
Ga0154005_100195	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes	31560
Ga0154005_100835	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes	9828
Ga0154005_100873	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Agaricales → Agaricaceae → Leucoagaricus	9485
Ga0154005_100983	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes	8389
Ga0154005_101669	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Agaricales → Agaricaceae → Leucoagaricus → Leucoagaricus leucothites	4928
Ga0154005_102463	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes	3002
Ga0154005_102595	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Agaricales → Agaricaceae → Agaricus → Agaricus bisporus	2821
Ga0154005_102683	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Agaricales	2688
Ga0154005_102996	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes	2283
Ga0154005_103252	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Agaricales → Agaricaceae → Leucoagaricus → Leucoagaricus leucothites	2000
Ga0154005_103276	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes	1988
Ga0154005_103560	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetes incertae sedis → Polyporales	1757
Ga0154005_103570	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae → Papilionoideae → 50 kb inversion clade → NPAAA clade → indigoferoid/millettioid clade → Phaseoleae → Glycine → Glycine subgen. Soja → Glycine max	1749
Ga0154005_105479	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Agaricales → Omphalotaceae → Collybiopsis → Collybiopsis confluens	966
Ga0154005_106149	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Agaricales → Omphalotaceae → Gymnopus → Gymnopus luxurians	865
Ga0154005_106797	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Agaricales → Agaricaceae → Leucoagaricus	783
Ga0154005_107072	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → BOP clade → Oryzoideae → Oryzeae → Oryzinae → Oryza	757
Ga0154005_109683	Not Available	602
Ga0154005_109826	Not Available	596
Ga0154005_110494	Not Available	572
Ga0154005_110687	Not Available	566
Ga0154005_110987	Not Available	558
Ga0154005_111410	Not Available	545
Ga0154005_112218	Not Available	523
Ga0154005_112295	Not Available	521
Ga0154005_112485	Not Available	516

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0154005_100060	Ga0154005_10006015	F079421	MKNFLDYFSARNYKTNKGYLTEWVTRKIRWSNEEEVIGILKVWTHSSREEECMKKKLKELNSMMNNEVLIALKALEEPSILRKIGDKQLNV*
Ga0154005_100195	Ga0154005_10019512	F000950	MKLLKKDSNNSEFSVEVVNVNSAAIKEIPDPIPLSGKEKGTLKLDFPLKL*
Ga0154005_100389	Ga0154005_1003897	F048691	MEDQYGLTPEYYVYDMKLLLNARYGQGMLFLILLFFKHRLRHFQAIAATLMVYDFIYHIPQQVRLSICKQ*
Ga0154005_100780	Ga0154005_10078012	F048691	MEDQYGVAPEEYVYDLKNLSNERYIQGMLFLILLFLKQRLKPFQAIVVPLMLYDFIYHIPQQVRLSIFK*
Ga0154005_100835	Ga0154005_1008356	F048028	MKSLAESIILLAGQLDKVKKVPNSKELCHIINDFLGMMGEVMDFIQEWLKHRTCRYEFM*
Ga0154005_100873	Ga0154005_1008731	F078055	IHPVANVSRVQRYTRQVEGQKKEPPQPVIIEGEEEWKVEKIINKR*
Ga0154005_100959	Ga0154005_10095914	F048691	MEDQYGLTPEDYVYGLKNLSNERYCQGMLFLILSLSIQQLKPFQVIVATLMVHDFINHCQTFHL*
Ga0154005_100983	Ga0154005_1009831	F000950	NKNQLFRAQLMKLLEEDNDNSESPPEVVNVNSASIEEIPDPLPLSGKGKGTPKLDFPLGL
Ga0154005_101041	Ga0154005_1010411	F065291	VLFIITTGSCLAQVSRLIFNLLEANCPLDESIDSMTIESLRFHHSESNRDTEADISRGDRGTISLGEEIHEEAR*
Ga0154005_101041	Ga0154005_1010413	F048691	MADQYGVTPEDYVDDMKILSNERYCQGVLFLILLFFKQRLKPFQAIVATLMVYDFIYHIPQQVRLSILR*
Ga0154005_101048	Ga0154005_1010486	F048691	MEDQYGLIPEDYVIDMKNLSNERYSQGMLFLILSLSMQQLKPFQVIAATLLLYDFIYHIPQQVRLSICK*
Ga0154005_101069	Ga0154005_1010693	F008983	LIQAYKTLYLNKAQSTIFGPKANIEKSREKKDPNTIEINEIPKKKEKTL*
Ga0154005_101158	Ga0154005_10115813	F048691	MEDQYGLTAEIYVYDLKLLSDKRYGQGMLFLILLLLKHRLRHFQAIAITLMLYDFIYYIPQQVRLPICK*
Ga0154005_101669	Ga0154005_1016698	F054481	VITMSAIDIYAIAHSGSMEFPELLLLRHVAVEFHPRGISRPLVNHDGIYLIGICDCKAKRIFISHNPDIPPTTEVLGPLKSSCTLETSHRQFGTTASFTYNSSQVGMATYDLVSHSSHYRWLQLDILNISNNKAIVRDLAGLDDNVGRVVLMRSGSNNRFLIMDVI*
Ga0154005_101997	Ga0154005_1019971	F048691	MEDQYGVTPESYVSDLKLLSNERYTQGMLFLILLFFKQRLKPFQVIVGTLMLYEFIYHIPQQVRLSTYKQ*
Ga0154005_102463	Ga0154005_1024632	F032889	MLVSGFLSLDKIGDEDPDNNILSWADTTDPGNHQQAMVVAAILNNQDQYGDSDCEDTKT*
Ga0154005_102463	Ga0154005_1024634	F000950	MKLLEEDSDDSESPPEVVKVNSTSIEEIPDPIPPSGKGKGTPKLDFPLGL*
Ga0154005_102595	Ga0154005_1025951	F002822	MEKTNILSDGRDTLKETTHGNLKKTYKMQAKSYRSTLRVYQKQDNFSTELELRGGVMSQTSFSHNSTNTCTIPTAQDASESPQKDLSNDAQNVSK*
Ga0154005_102683	Ga0154005_1026832	F083492	MLRNVHRGTTHVLKSYINQVLNGAINHYNNALITAYNRIVHLEAQVSQLQEELTRLPGENVAFKAKVPEPPTFADSENKMHLHNW*
Ga0154005_102996	Ga0154005_1029962	F048028	MKSLVESMTILANQLDRVKKAPNSEELCQTIHEFPRIMEEVMDFIQEWLKNWTRMYEFM*
Ga0154005_103252	Ga0154005_1032523	F050816	MPVALKVLSARNVVVHTEWKTTDLWLGVVRPIPSPTLLERLQQMVLPALTPSSV*
Ga0154005_103276	Ga0154005_1032762	F048028	MKSLVESMTILANQLNRVKKAPNSEELCHTIHEFPRIMEEVMDFIQEWLKNWTRVYEFM*
Ga0154005_103560	Ga0154005_1035601	F083491	SLFSSQVPENSKNPCKTGTMRMDYSCTEGRFISLKAWMTLCDNKSFRCTMICYLPDTQVSGRPMSWSPEITGGLE*
Ga0154005_103570	Ga0154005_1035701	F061597	IYFNFGFVDCRNCKTLDKLTDQPGTLIPLDRGGVPDLSVSGNKFDLVEVDPHDPTTTSEPEAPMQSLNQLPMVTNLAAARSA*
Ga0154005_105479	Ga0154005_1054792	F000950	MKLLEEDSDDSESPSEVINVNSVLVEEIPDPVPPSGKGKGTPKLDFPLEL*
Ga0154005_106149	Ga0154005_1061493	F000950	MKLLEEDSGNSESPPEVVNVNSASIEEIPDPAPPSGKGKGTPKLDFPLGL*
Ga0154005_106797	Ga0154005_1067972	F048028	MKSLVESMAILSNQLDKVKKAPNSKELCHTIHEFPRIMEEVMDFIQEWLKNWTRMYEFM*
Ga0154005_107072	Ga0154005_1070721	F061597	KTLDKLTDQPGNLIPLDRAEVPDLSVSGDNFDLVEDDPHDPTTTSEPEAPMQSLNQLPVVTDLVDARSA*
Ga0154005_108332	Ga0154005_1083321	F048691	MADQYGQIPEIYVYDMKDLSSERYCQGMLFLILSLSMQQLKPFQVIIATLMLYDFIYHIPQQVRLSMCKW*
Ga0154005_108333	Ga0154005_1083331	F048691	MADQYGKIPEIYVYDMKDLSSERYCQGMLFLILSLSMQQLEPFQVIIATLMLYDFIYHIPQQVRLSICEW*
Ga0154005_109683	Ga0154005_1096831	F001430	MLEIKILPINFKKVTNECAENNVLPITFEIVNDEYAENKNLADYF*
Ga0154005_109683	Ga0154005_1096832	F001430	MLKIKILPISFEIVTNEYAENKVLPITFEIVTDEYVENKNLVDYF*
Ga0154005_109706	Ga0154005_1097061	F048125	MSGDEAFGSGSRAAIHYDYSNNNRNERSAHHNKPP
Ga0154005_109826	Ga0154005_1098261	F001430	MLNIKILPITFEIVTDECAENKVLQITFKIVTDKYAENKNLADYF*
Ga0154005_109826	Ga0154005_1098262	F001430	MNMLKIKILPITFELVTDECAENKVLPITFEIVTDECAENK
Ga0154005_110044	Ga0154005_1100441	F002822	NGFLIHDKDMEKTNTLSDGKDTLKETTHGNLKKTYKMQAKNCRSIFRVYQKQDNFSMELEPRGGVMSQTSFGHNSTATFA*
Ga0154005_110494	Ga0154005_1104941	F001430	MLKIKILPITFEIVTNEYAENKVLSITFEIVTDEYVENKNLVDYF*
Ga0154005_110687	Ga0154005_1106871	F044940	MALRTLFKSEGTEKEGEEKNSSSTQAKRGRREKSSLTTQENFWGK*
Ga0154005_110934	Ga0154005_1109341	F048691	MADQYGLFPEDYILDLKTLSDTRYIQGMLTLDLLFSKQPLKPFQVVIATLMVYDIIYLIPQQ
Ga0154005_110987	Ga0154005_1109872	F001430	MLKIKILPITFEIVTNGCAENKVLPITFEIVTDEYVLKINLADYF*
Ga0154005_111410	Ga0154005_1114102	F001430	MLKIKILPITFEIVINEYAENKVLPITFEIVTDEYVENKNLVDYF*
Ga0154005_112218	Ga0154005_1122181	F081965	KIQKKIGKKFKKLKNTITASFQAKIRWNWQRKRENKNYRSVSFLPDA*
Ga0154005_112295	Ga0154005_1122951	F000950	MKLLEEDSDDSESPSEVVNVNSALIEEIPDPVPPSGKGKGTPKLDFPLGL*
Ga0154005_112485	Ga0154005_1124851	F030951	MSWDDQVAAEESRGLASGVVSTPQAPLSTSLMPHGLNHGTAESGSQLGGGSAEPGPCDVTGDRDIPVTSDSDNLYNMSQPVTSNIVTPDITHDCDLWDSEHHVTSLSGHPGYIENDARVIASSVMCITRFIQKHSIEGRSIEQFPPILGIGSIMWQLFQTMSASGW