Scaffold Ga0136634_10106076

Overview

Basic Information

• Taxon OID: 3300012046
• Scaffold ID: Ga0136634_10106076
• Source Dataset Name: Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ833 (21.06)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1064
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus → unclassified Nitrosopumilus → Nitrosopumilus sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Ice → Unclassified → Polar Desert Sand → Polar Desert Microbial Communities From Antarctic Dry Valleys

Source Dataset Sampling Location

• Location Name: Antarctica: Dry Valley
• Coordinates
  • Lat. (^o): -78.0467
  • Long. (^o): 163.6821

Associated Families

Family	Category	Number of Sequences	3D Structure?
F068786	Metagenome / Metatranscriptome	124	Y
F093804	Metagenome / Metatranscriptome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0136634_101060761	F093804	GGAG	MTNNSPEPKPVGDLSHRIVKKIGEIDPQSCDPNNKKEIDLRSWKKQRSEKWQVYLDSNTGHLRQLKLH*
Ga0136634_101060762	F068786	N/A	MSTDASEKIVDLVNSPEVQIMKEGEKDFIDIDFKNLEKGKFYRVEYEGDVYGVEKQDDGKIAYYEVVE*