Scaffold Ga0153801_1001525

Overview

Basic Information

• Taxon OID: 3300012017
• Scaffold ID: Ga0153801_1001525
• Source Dataset Name: Freshwater microbial communities from Central Basin Lake Erie, Ontario, Canada - Station 1208 - Top - Depth 1m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Molecular Research LP (MR DNA)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4836
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (53.33%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (42.86%)
• Associated Families: 7

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Central Basin Lake Erie, Ontario, Canada

Source Dataset Sampling Location

• Location Name: Ontario, Canada
• Coordinates
  • Lat. (^o): 42.6244481
  • Long. (^o): -80.9227115
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024040	Metagenome / Metatranscriptome	207	Y
F032536	Metagenome / Metatranscriptome	179	Y
F034827	Metagenome / Metatranscriptome	173	Y
F039497	Metagenome / Metatranscriptome	163	N
F062447	Metagenome / Metatranscriptome	130	N
F082149	Metagenome / Metatranscriptome	113	N
F104482	Metagenome / Metatranscriptome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0153801_10015251	F082149	N/A	MKLGLHIDWCISRWFGRRNNLEIKIFLPTITFGINNDYENKWCGFVFNLKTDISFESYEYGKILSLILFGFGVKVSEFNL*
Ga0153801_100152510	F062447	AGGAG	MKHKIFWENNSRIKGIVPAEQIIKKTQTHNFPCEAVTIRMHDLNSKNPIAVAYFHGKESQHIGWGGQNHSFAETKLIVSFNKEKEEYGFNGAINSFSLQDLKEVLDSVRETLNKV*
Ga0153801_100152511	F032536	GGA	MNQKQTFEELMRSFRFHKNPILNWFLGEVSYYSHTYLNVKWGLKNKLQKLIRGYSDSDCWNLPQSTAKFMLPRIKHLRQNYHSLANRHHLIIDDKIVPYVGKEDDFVFNTTLGCHIDKTTGLEISLDQKEYEYILDEIIFALQTIVDEDDINVSLEEVYEVYPKGFDPIKDRQMFLEKQEDGTYLVEFERKENIQPDYSKLNKAYERQRNGLMLLGLYFKDLWD*
Ga0153801_100152512	F104482	N/A	MKKKKKRMTSEEFEKAMKAQGRLVSKVYYRITFKGVGLYILNSFQFKLLPNFFYMNGKYFTECGFNWFGWIFEFQWNR*
Ga0153801_100152514	F034827	N/A	MKYNITSQDKEALTEFDKIKEGEVFSFFDPESVQRGNHAIYMKIRVPNTTSVNIIDLEDGKAYDFSAKKRNTINDPDEKQGNRVYKLNAKINIVVL*
Ga0153801_10015252	F039497	GAG	MSEEDNFNCKAGNQLRDTLYKDILRYAQESDMTAYQVIGVLESLKFDLLNAMQNAGKDEENED*
Ga0153801_10015259	F024040	N/A	MNIYVTGHNWLAKVDLEDSITKNDRYAEATTRAIESVLDDEEKQGVELKIMDYDDYGLGIITLTYDEKDIKNEGEHRVMLTSNILANAGRWEQYKFLRNYEENCKEQGL*