Scaffold Ga0120387_1000660

Overview

Basic Information

• Taxon OID: 3300012016
• Scaffold ID: Ga0120387_1000660
• Source Dataset Name: Sheep rumen microbial communities from Wyoming, USA - O_aries_Forg_1397
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Missouri
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 28828
• Total Scaffold Genes: 61
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (21.31%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Mammals → Digestive System → Foregut → Rumen → Sheep Rumen → Ruminant Gut Microbial Communities From Various Locations In Usa

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 41.314168
  • Long. (^o): -105.584589

Associated Families

Family	Category	Number of Sequences	3D Structure?
F048027	Metagenome / Metatranscriptome	148	Y
F082826	Metagenome / Metatranscriptome	113	Y
F089629	Metagenome / Metatranscriptome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0120387_100066019	F082826	N/A	MNYNASIVVEVLANDEGEALDKARDKAEDADIRQFTIGSENESKILRAD*
Ga0120387_100066022	F048027	AGGAG	MTKKVTETKKAKFSLDTRVRLVAENEGGKGVKMPVWFNLPQHKELRQQHIDICKGLVALSVANDNYPITYLVYFAVGKNAHRKEVFEDGYTRFDEKKAEKIFSWLKLFAKYHKNAKLFRNPNVAHALCRFYDKFSTKTKDFKAAMELMESNPKVDVKNAKAIVEGMGIAKRTEESELAAAETAMEPAVVTA*
Ga0120387_100066051	F089629	N/A	MKQSNFSVSELLIAVVDVFSTIAACKDFASCKFGYGFIARSTPKFRAPKATATEWLNEFGETMPNIVKVTKVTNARAYDYAKAINRTLAKQGDEANFKSDAMNGYDWVVPNIIKRAQKDGNLQLCVTFKENDRTKFESFYIVADHFATEDELTFIKEHLYVAPNKSVKQTTSGIEDEDIVMVRNYKFSNIVAVGQTPEIEEMWANIAE*