Scaffold Ga0153799_1010776

Overview

Basic Information

• Taxon OID: 3300012012
• Scaffold ID: Ga0153799_1010776
• Source Dataset Name: Freshwater microbial communities from Eastern Basin Lake Erie, Ontario, Canada - Station 879 - Top - Depth 1m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Molecular Research LP (MR DNA)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2021
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Candidatus Magnetobacterium → Candidatus Magnetobacterium casensis (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Central Basin Lake Erie, Ontario, Canada

Source Dataset Sampling Location

• Location Name: Ontario, Canada
• Coordinates
  • Lat. (^o): 42.581667
  • Long. (^o): -79.9225
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F035216	Metagenome	172	Y
F068742	Metagenome / Metatranscriptome	124	N
F094923	Metagenome / Metatranscriptome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153799_10107763	F068742	N/A	MSFRFYLQNRNQNKKQKAKKMSQNISISIDLKLIDQKKLKRITRQSGAEAAFLDLLLIPTPNSPYGEWMVKQRSTKEEVEAQVQTPILGNGKTAVKWEGQ*
Ga0153799_10107764	F094923	GGAG	MSDHDQDMVARANRTMKAIRTMVRIILTTAILGLLWLLWRLCQ*
Ga0153799_10107765	F035216	N/A	MIITYIIVSSIICTGAFAVGLSQRRERRRLVTMTQQASIPHRLQAPVSQIAELQMELELRTLQLEAERLESDRLRSIIRSMR*