 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300012012 Open in IMG/M |
| Scaffold ID | Ga0153799_1007479 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Eastern Basin Lake Erie, Ontario, Canada - Station 879 - Top - Depth 1m |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | Molecular Research LP (MR DNA) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 2553 |
| Total Scaffold Genes | 6 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (50.00%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (60.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Central Basin Lake Erie, Ontario, Canada |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Ontario, Canada | |||||||
| Coordinates | Lat. (o) | 42.581667 | Long. (o) | -79.9225 | Alt. (m) | Depth (m) | 1 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F003579 | Metagenome / Metatranscriptome | 478 | Y |
| F005113 | Metagenome / Metatranscriptome | 411 | Y |
| F009125 | Metagenome | 322 | Y |
| F074549 | Metagenome | 119 | N |
| F100406 | Metagenome | 102 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0153799_10074792 | F003579 | N/A | MGSPAQPKVGTLFEVRYVQYTDPTAVADCHLLDAEGVEIMPVGLVPATAEQCAEWTDDAAFAAVLAVNAGFELVSEE* |
| Ga0153799_10074793 | F005113 | N/A | MTKEEHKNAIVTQLQQQSLNLLVDSLAAALAEIESLKAAAADKPTP* |
| Ga0153799_10074794 | F100406 | AGG | MAPYIPAAPAGADPLRTVSALAVLVSGARYADIKAGALVIYVPRWAGRNVMHQAAQIDAGGWIMTGLGNKDYENRERVTAANFVGIVARTYVWGK* |
| Ga0153799_10074795 | F074549 | GGGGG | MSLTEILFNAASGGVVGSLLHLGTSFFETWRKRKDAEVEIMLLNAKLAAAEKEAAWNAFTASQQTGDNTLVIPAGTWPWVGSTYVLVEAFRQLTRPGLTWAGFIFLTSVYFSASPEVRATMSPEIQFGSWTLIFWWVGARYNKSK* |
| Ga0153799_10074796 | F009125 | GAGG | MTSDHTKAVLTAATPTIAMLSLSQVNEVAALVGSLLGIAFLLWRW |
| ⦗Top⦘ |
|
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |