Scaffold Ga0119955_1013561

Overview

Basic Information

• Taxon OID: 3300012006
• Scaffold ID: Ga0119955_1013561
• Source Dataset Name: Freshwater microbial communities from Lake Lanier in Georgia, USA - LL_1101B
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Georgia Institute of Technology
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3006
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (92.31%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier In Georgia, Usa

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.21
  • Long. (^o): -83.96

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000821	Metagenome / Metatranscriptome	876	Y
F001477	Metagenome / Metatranscriptome	687	Y
F003863	Metagenome	464	Y
F031792	Metagenome	181	Y
F086805	Metagenome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0119955_101356111	F086805	GAGG	MKDLSKRGNLVLGVVIGLIIAGIWYISGHLWYVEGEGYCLGTMAQCFH*
Ga0119955_10135613	F003863	GGAGG	MESKQVSGRQVVHYRNYRRARDKALVRLAHLYPDTYKQLLDEQRSFDEQEGKTWSINPDSRLTVGIHTRANNTPPFGDPADAGEDEGDNGGEA*
Ga0119955_10135614	F001477	AGAAG	MGAIYALGIWRAIMSNVISFHPKKSPLILLYEVVDENGNAEWGGNNPEHCMQWLSLAPNNSRVLVSGWDSDEEDAHLVGQSLDITDIIKAASL*
Ga0119955_10135616	F000821	AGAAGG	MNEEYLAAKANLCLNQAQEDLKQQEIARAIKNLKRANSAMARLFGIEEETDENN*
Ga0119955_10135618	F031792	AGGAGG	MGYEPRLDDDIALGIEEEVEPIKCFRCSDELDEDEIVWADIEGQIVKEGNDTAWCVACLPSEGESK*