NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0119955_1001243

Scaffold Ga0119955_1001243


Overview

Basic Information
Taxon OID3300012006 Open in IMG/M
Scaffold IDGa0119955_1001243 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier in Georgia, USA - LL_1101B
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterGeorgia Institute of Technology
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12995
Total Scaffold Genes26 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)20 (76.92%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (85.71%)
Associated Families7

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier In Georgia, Usa

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.21Long. (o)-83.96Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000821Metagenome / Metatranscriptome876Y
F001094Metagenome / Metatranscriptome780Y
F001477Metagenome / Metatranscriptome687Y
F003784Metagenome468Y
F015702Metagenome252Y
F026830Metagenome / Metatranscriptome196Y
F031792Metagenome181Y

Sequences

Protein IDFamilyRBSSequence
Ga0119955_100124311F003784GGAGMYDNDKARVGHNDTDFAAYGLSDLASTIPKRDTSSAPSTNPLVDHPAVTGYRAVGVSTQDLVSFIESFASLRASRVKSVGHSQYAIAQGQKFESFTPADTIRELIEELADASNYIDFLAIKLLNLAHIMEVGLPDCD*
Ga0119955_100124313F026830N/AMVKGETVMPVPEGDITTTEILVPEVVPEAEEVEDDLPELP*
Ga0119955_100124322F001094AGGAGMNKEKLIAIAATYLRAGIASVIALYLAGVTDPKALTTAGIAAIAGPVLKALDPKCTEFGRGSK*
Ga0119955_10012433F031792AGGAGGMSYEPPLNDPDFYEEEGEAEPTRCFRCSNGLEEDDIVWANDEGQIVKEGNDTAWCVACLPSEGESK*
Ga0119955_10012434F000821GGAGMNEEYLQAKADLCEKLAAKDIQEGEIARAIKNLERANSALYRLGLVREGEADD*
Ga0119955_10012435F015702GGAGMIREIELEYTAYNLVKLARKVWGENATEYLAGRLESVITYNQMKVLIDSLKGEADE*
Ga0119955_10012436F001477AGGAGMSNVYSIHPPKSPLILLYEVVEESGRAEWGGNSAEECLQWLSLAPTGSRVLVSGWESDEEDAHLVGQSLDITELIVKALSL*
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