Scaffold Ga0119955_1000087

Overview

Basic Information

• Taxon OID: 3300012006
• Scaffold ID: Ga0119955_1000087
• Source Dataset Name: Freshwater microbial communities from Lake Lanier in Georgia, USA - LL_1101B
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Georgia Institute of Technology
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 51789
• Total Scaffold Genes: 67
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 50 (74.63%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (100.00%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier In Georgia, Usa

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.21
  • Long. (^o): -83.96

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000258	Metagenome / Metatranscriptome	1443	Y
F000369	Metagenome / Metatranscriptome	1222	Y
F000376	Metagenome / Metatranscriptome	1216	Y
F038675	Metagenome / Metatranscriptome	165	Y
F060898	Metagenome / Metatranscriptome	132	N
F071173	Metagenome	122	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0119955_100008712	F000376	GGA	MSIYQEQAKECKCCGKHVPLPTVLKEYNGISLCPTTFANVIEYKRIWKSLGNRPAGSTRKHFSEYVQQIVEETIDKNEDGTL*
Ga0119955_100008714	F000369	AGAAG	MSQIEPAVHYDRMNKVVEELLKGSNTTQIATITGFTRKEVLELIDDWKSVVHNDTNARDRAKEAVSGADQHYAMLIKEAWKTVEDADTQGQLNVKANALKLISDIETKRIGMLQQVGLLDNAEVASQIAEAERKQDILVKILKEVTSSCPKCKMDVAKRLSQITGVVEAIVIEDASGI*
Ga0119955_100008718	F038675	AGG	MKLYQSKEWLFRRYSVQKKTIVEIAKECNVSAMTIQRHLEQFGLIKKR*
Ga0119955_100008748	F071173	GAG	MITKFGKRFLISYLAGNVDFVKKDIALGIGSTAANAKGNDTRLQFEFYRLPATLGSIDIQQTGVDGDGDPIFSYAAIYMATIPQDIAGVISEVGLYPGSRTSYNNFDSKFITTFENNLNWSDGTYNPQLQMNDTALPFLSKIGESMIKIQAVSGTPKEYVNSLITYDISGYSVNDTLTIAYKKADTLASKIRVKFYSSNSDYYYMDYTPESGTGDKISSKTMNNLFSNQVGTPDPTSIIKVGVEVTASSGTTTVYFDGLRVNDEDTFDPTYGLISRSVLVTPLQKASGRQVDIEYKLTLEF*
Ga0119955_100008754	F060898	AGAAG	MPELIQTLKAYNKRESNSRRFTASLNGVDLDIDEEQEGPSFDDIERKALGINASGDDVVSLQGRLAAQAGFGIGEGLGYAKE*
Ga0119955_100008757	F000258	GGAGG	MTNYKEDVMFDVRKFLWNELTATQIFNADDYYHDEMNGEIIPIIPVQQSPELNQFFSGKKHLVYDKIGIAYEDNWAICCEQLLFTIYATDVSEIAEIRNLMTDLFRRMDDSARDINRSGVISNKFKFYSMYIADISPTGPSDELKGFFSAEVVLEIKYSRILDPLGRFN*