Scaffold Ga0119951_1118288

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0119951_1118288

Scaffold Ga0119951_1118288

Overview

Basic Information
Taxon OID	3300012000 Open in IMG/M
Scaffold ID	Ga0119951_1118288 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Lanier in Georgia, USA - LL_1007A
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Georgia Institute of Technology
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	609
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier In Georgia, Usa

Source Dataset Sampling Location
Location Name	USA: Georgia
Coordinates	Lat. (^o)	34.21	Long. (^o)	-83.96	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F029327	Metagenome	188	Y
F078214	Metagenome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0119951_11182881	F078214	GGAG	MTRDLTPFKLWLQRMYMDHKDEANAYGFPTCDAATYFRMYKYWLKREYRHQQQNTAEL*
Ga0119951_11182883	F029327	N/A	MGFYKDIEIEIMQWQARGRTQEETYIYFKDYVTQEDVARIFARDCDEETV*

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