Basic Information | |
---|---|
Taxon OID | 3300012000 Open in IMG/M |
Scaffold ID | Ga0119951_1043803 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Lanier in Georgia, USA - LL_1007A |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | Georgia Institute of Technology |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 1331 |
Total Scaffold Genes | 5 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (80.00%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Associated Families | 3 |
Taxonomy | |
---|---|
All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon | (Source: UniRef50) |
Source Dataset Ecosystem |
---|
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier In Georgia, Usa |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | USA: Georgia | |||||||
Coordinates | Lat. (o) | 34.21 | Long. (o) | -83.96 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F001125 | Metagenome / Metatranscriptome | 769 | Y |
F034472 | Metagenome / Metatranscriptome | 174 | N |
F045058 | Metagenome / Metatranscriptome | 153 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0119951_10438031 | F045058 | N/A | VMGLDPQALTPLTFNIGTGSIEKVSRIRDKYNLTESYVSDYEPTGYTGR* |
Ga0119951_10438034 | F001125 | GGCGG | MGDRANFGFRDHKGDTVYLYGHWAGHNMLANLASAVLAAESRWQDESYATRICISQLVGEDWNQTLSWGINVNEIGDNEHKVPVIDWKNRSFTLYEEDLDTVVFSMDLSQFVEKYSQLVMV* |
Ga0119951_10438035 | F034472 | AGGA | MPNWVYNTLTIQGPKSEIDMIKDRLNAPFTLAQETFGMGDISTMGFPTKI |
⦗Top⦘ |