Scaffold Ga0119951_1005346

Overview

Basic Information

• Taxon OID: 3300012000
• Scaffold ID: Ga0119951_1005346
• Source Dataset Name: Freshwater microbial communities from Lake Lanier in Georgia, USA - LL_1007A
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Georgia Institute of Technology
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6137
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (78.57%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier In Georgia, Usa

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.21
  • Long. (^o): -83.96

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010302	Metagenome / Metatranscriptome	305	N
F017131	Metagenome	242	Y
F070095	Metagenome / Metatranscriptome	123	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0119951_100534612	F070095	AGGAGG	MEFYANLDYISFYINNLYPSGVAIEIPTWLLVGSIGLIWSIRQWKK*
Ga0119951_10053462	F010302	AGCAG	MVDVLLNTDDVVVIGPPESIDLLVDIGPQGVRGSKFIVGSGEPNALTASGVLFGNTLILNDMYINTAPGENYGYMYQYISQAGANTWVQVLKVSPAIYSSVETIAFTSGAGSITIPISNIVTVSGSPLTASNFNVQFQIEGPNPIASSMEIPALAGAGTNLVINFDAVQYSSGTWSNLTGSKTVHLFISIV*
Ga0119951_10053463	F017131	AGGAGG	MAFPGTYNFNYYRGDRYEFVIRPKTANGGAFDLTGYSANFFVANARGEGKTQYEMQAIVDGSADTVTCTILPGAGESLTAGNYVYDVQIDSGATLVYTLLTGTILEQTINNG*