Scaffold Ga0119951_1003053

Overview

Basic Information

• Taxon OID: 3300012000
• Scaffold ID: Ga0119951_1003053
• Source Dataset Name: Freshwater microbial communities from Lake Lanier in Georgia, USA - LL_1007A
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Georgia Institute of Technology
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8864
• Total Scaffold Genes: 25
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 21 (84.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier In Georgia, Usa

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.21
  • Long. (^o): -83.96

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000354	Metagenome / Metatranscriptome	1244	Y
F005705	Metagenome / Metatranscriptome	392	Y
F013757	Metagenome / Metatranscriptome	268	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0119951_100305319	F005705	AGGAG	MKIVVKIPQKTRAHLVLFCANTPFKQKRVESKKQYKRNPKHKGNHNAD*
Ga0119951_100305325	F013757	N/A	LTNCIAKAKLVFNKNLKTYKLVVAFNAHKTIKPNGQVKYAFPTQAKCAYVSGDLLAENLQAELTKVLPTVYSTLRTNSVEFVE*
Ga0119951_10030534	F000354	GGAG	MAKTNYDNFASFDLNEACDHFDCTDQKAWKKIRPFIVADGEEYAEVMEKEFDFEEVPDTDHMVFEAGVKYALTKMNIALDKAGIDVQVCEVDLVESMGFMMVRCDDEPEDFVKRVLKKPVMMVDSWV*