NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0119951_1000134

Scaffold Ga0119951_1000134


Overview

Basic Information
Taxon OID3300012000 Open in IMG/M
Scaffold IDGa0119951_1000134 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier in Georgia, USA - LL_1007A
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterGeorgia Institute of Technology
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)50647
Total Scaffold Genes66 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)55 (83.33%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier In Georgia, Usa

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.21Long. (o)-83.96Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000258Metagenome / Metatranscriptome1443Y
F001106Metagenome / Metatranscriptome776Y
F005053Metagenome / Metatranscriptome413Y
F071247Metagenome / Metatranscriptome122Y

Sequences

Protein IDFamilyRBSSequence
Ga0119951_100013429F071247GGAGGMGSNNKIPFNKTVIKNGRIVRLRKDGTVKADLGPYKANHKKVK*
Ga0119951_100013455F005053GGAGGMAMYLPRGSILSIEAKDLLATPAGTTKIWNKVTEHNRSDLSVSVDRIEKAVRTSNGTLRKNYTTDKRRFSVSWSMLPSYRTLTVDGAWGAEDIRSFYLSEEGQQSFKIRINLAKNGTDQTSSGYEEYNVVFGGCNFSVVKRGLQPHWNVSIELEEV*
Ga0119951_100013460F000258GGAGGVTANYKLDAMLELRKYLWKELYSREIFDETDYWSDNLNENIVPIIPVQQSAEMNQFLSGKKHIVYDKIGMSYEDNWLICCEQILFTIYSTDLSEINEIRNYMTDEFRRVDESAKSINKWSGLSNKFKFHTVHIADISPTAPSEELQGFFSAEVILEIKYSRITDGQGRFL*
Ga0119951_100013464F001106AGGAGMSFETLKVSELKQIAEDFAVETEGLKNKADIIAALAEEGVTWSVYNKTIENMKEDSEDMATEVLPKFDPKADQPENTVLVRMTRDNFRYDIMGFTFTKEHPFIAMSKEYAQEIFDKEDGFRLATPKEVQEYYN*
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