Scaffold Ga0120380_1021652

Overview

Basic Information

• Taxon OID: 3300011989
• Scaffold ID: Ga0120380_1021652
• Source Dataset Name: Sheep rumen microbial communities from Wyoming, USA - O_aries_Con_7429
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Missouri
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1768
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Prevotella → unclassified Prevotella → Prevotella sp. BP1-145 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Mammals → Digestive System → Foregut → Rumen → Sheep Rumen → Ruminant Gut Microbial Communities From Various Locations In Usa

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 41.314168
  • Long. (^o): -105.584589

Associated Families

Family	Category	Number of Sequences	3D Structure?
F077963	Metagenome	117	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0120380_10216522	F077963	N/A	MIKLFNRLLDLINIHPDKNQRWTLSTLFVVGLLDAYVGPAISKAWVTELPAEWLAFQSLVYSVVGLFIGMIWKGWVRRKAIRWFTVLCIIESAAGFCVGMWLCFVEYNVWVLAIACLLYGTLVSEFIGKCIMAFRPKLWNEKEREVYDNNNDVVCGIYCIIGYVCALLFMPSLRVAMFVWGLCCGIDNIGWLVVYHRNKDKFKED*