Scaffold Ga0120380_1000034

Overview

Basic Information

• Taxon OID: 3300011989
• Scaffold ID: Ga0120380_1000034
• Source Dataset Name: Sheep rumen microbial communities from Wyoming, USA - O_aries_Con_7429
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Missouri
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 134182
• Total Scaffold Genes: 187
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 72 (38.50%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Mammals → Digestive System → Foregut → Rumen → Sheep Rumen → Ruminant Gut Microbial Communities From Various Locations In Usa

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 41.314168
  • Long. (^o): -105.584589

Associated Families

Family	Category	Number of Sequences	3D Structure?
F077963	Metagenome	117	N
F088010	Metagenome / Metatranscriptome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0120380_1000034181	F088010	N/A	MKKDFFGKVMGVLLLAVMTLVCSCNGCKGKTPKIDDPVVVYHDYDGVVQDFTAGVGHIQALHRQTMYSLIQHLQDEGHTIALNGKYQWRNSLVILNDTVTMENIDDLHVVSIRDVFFYWDNQRGPQVQYITDHVKDGTQIPWPINDVWIEDKDMSDKPIKLSAEQALIRLKEWNGILPKDCNFIILRLPVGPKDCNPQWTFGDVDDVLFIDAVTGEIRDYDPAFK*
Ga0120380_100003497	F077963	N/A	MKLLRKTLDFFNIHPDHNQRWTLTTLFLTGLLYTYVEPVITKAWISELPAEWLAFQSLTYSVVGLVIGMIWKGRLRRWAVRWFTVLCIIESAAGFLVGMWLCFVDYNVWVLAVACLLYGTLVSEFIGKCLMTFRPKLWNEKEREVYDNNNDVVCGIYCIVGYVCALVCMPSLQVAMFVFGLTCGLDNIGWLVVYHKNRDRFRELDNE*