Scaffold Ga0120380_1000001

Overview

Basic Information

• Taxon OID: 3300011989
• Scaffold ID: Ga0120380_1000001
• Source Dataset Name: Sheep rumen microbial communities from Wyoming, USA - O_aries_Con_7429
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Missouri
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 412514
• Total Scaffold Genes: 607
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 149 (24.55%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (30.00%)
• Associated Families: 10

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales (Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Mammals → Digestive System → Foregut → Rumen → Sheep Rumen → Ruminant Gut Microbial Communities From Various Locations In Usa

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 41.314168
  • Long. (^o): -105.584589

Associated Families

Family	Category	Number of Sequences	3D Structure?
F027710	Metagenome / Metatranscriptome	193	Y
F028722	Metagenome / Metatranscriptome	190	Y
F042680	Metagenome / Metatranscriptome	157	Y
F048027	Metagenome / Metatranscriptome	148	Y
F051619	Metagenome / Metatranscriptome	143	Y
F057815	Metagenome / Metatranscriptome	135	Y
F063246	Metagenome / Metatranscriptome	129	Y
F066344	Metagenome / Metatranscriptome	126	Y
F082004	Metagenome / Metatranscriptome	113	Y
F102225	Metagenome / Metatranscriptome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0120380_100000110	F028722	N/A	MANTVQNGQTCLEKRGMEERHQEITRSDYNIENQYGPTHPDALSDGDAQGKGTGHGGHTHFLPDCTKPTTQINYSNFDTENGGGYYDIKGRNGISGRERALAISMYNKEVPYGANLVDTTQNVNDGQYFVGQQIGQKTTT*
Ga0120380_1000001136	F051619	N/A	MDNSTVNWEEVRINASINIMNAILSSSIMVFIFQFIFKRQVADIAVEYANKLIEELKKKGE*
Ga0120380_1000001208	F048027	AGGAG	MAKETKTKKVTIDSRVRAIAESGSGKGVGMPNWFTLPQNKEKRALHIDICKKLTELSNAHDKYPITYLVYFAVGKNAHRLCTFLGGYDKIDEKKAETIFKWLEMFAKHHKNEKLFKNPNVAHALCRFYDKYSTKTKDFKEALAKSEPNPKINVKNAKMSVETLGIAKKVEETAKTEEMAMAMAAAE*
Ga0120380_1000001374	F102225	GGTGG	MKHIIRTIEENYHEYLWHMRCNGDVFAEYWRPFNFDEWVMNGMPIYDGGVKLDDGTEHKVTFRY*
Ga0120380_1000001377	F066344	N/A	MGKFLQMMSQNDSKALVARASQINTQAKIAQETIVQKLKNDIAEVEIEIQNLTDFAPDTTQSLRPGVKGWNPTTWAASLQDAKTRLYELNIELKIAEATLKEFFGDEGAVLAPAE*
Ga0120380_1000001386	F027710	AGAAG	MEKRKLYVLIDKSLKPVYGCVQGGHAVAQWMLEHPYSREWQNDYLIYLSADVPKWRRRLESLDVEYTEFKEPDLNFKVTALAVFGHEELFKRLKVITED*
Ga0120380_100000140	F063246	N/A	MGKLKIEINDIQNIRDLLQNAYNLADEQIIQAQNEINKMANATQLQEESIDGKAKYGKIINDYLGVKDKAISKKIDIAKILTDIHNHNGDVKEALENGTQSKGMDFNFDDIKKMIDESYEDKEKTKTIQLNKK*
Ga0120380_1000001412	F042680	N/A	MVVQDIKSIVKGIAQLQYIMSGGIAVYHITSTDDKKYQLEIDLSDKKDVGETAAFKPIEKAILLMRWIRKANENDTLIEIK*
Ga0120380_1000001483	F082004	N/A	MILHLNLTEDHLKLVRFLNIEDNDDDVLTINKKVMLTMQTHILDDVAMILGLRDKAIKNTTEDADGSAYPDDVEKYMLDTYHYVSDNLYLIESLLHQKVFEGIKPNTEYICKDNEMIWKEKDE*
Ga0120380_1000001595	F057815	N/A	MAKKIKDSDILKAMAMHLDEDSVVFGANGHYAVGAYYDITKVSSVFGDKDYNSQEAIDGADSTEAAEKYRTDNGEMNESLQKAEWLKNW*