Scaffold Ga0119784_1026938

Overview

Basic Information

• Taxon OID: 3300011988
• Scaffold ID: Ga0119784_1026938
• Source Dataset Name: Human oral microbial communities from Los Angeles, CA, USA - S04-02-D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of California, Los Angeles
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1370
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Human → Digestive System → Oral Cavity → Subgingival Plaque → Human Oral → Human Oral Microbial Communities From Los Angeles, Ca, Usa

Source Dataset Sampling Location

• Location Name: USA: Los Angeles
• Coordinates
  • Lat. (^o): 34.0722
  • Long. (^o): -118.4441

Associated Families

Family	Category	Number of Sequences	3D Structure?
F033081	Metagenome	178	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0119784_10269383	F033081	GAGG	MYPPDLMVVHRPRKGAMAWLFNRVMPTDNRPTFVWPRLVVAIEDTRHFDRRELSVIAVVLIVMTIATIKALLFIPGLDSSVVELLTSIFATFLPARWATGAAWVAGVAGVLLIGDFTNYTKQQKALHSLKATRCEAYNTLLLFALWEEQAFRSGSERWSWCERVRASVCFGLAHVVNIWYSFAAGTALSMTGFGFLLVYLWYYRKYRSQIIATAAAATVHALYNAIALSLIAVTAAVYLAINIAKML*