3300011988: Human oral microbial communities from Los Angeles, CA, USA - S04-02-D

Overview

Basic Information

• IMG/M Taxon OID: 3300011988
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0113963 | Gp0134614 | Ga0119784
• Sample Name: Human oral microbial communities from Los Angeles, CA, USA - S04-02-D
• Sequencing Status: Permanent Draft
• Sequencing Center: University of California, Los Angeles
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 227536978
• Sequencing Scaffolds: 5
• Novel Protein Genes: 5
• Associated Families: 4

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → unclassified Eubacteriales → Clostridiales bacterium	2
Not Available	2
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Oral Microbial Communities From Los Angeles, Ca, Usa
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Subgingival Plaque → Human Oral → Human Oral Microbial Communities From Los Angeles, Ca, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal secretion

Location Information

• Location: USA: Los Angeles
• Coordinates
  • Lat. (^o): 34.0722
  • Long. (^o): -118.4441
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F033081	Metagenome	178	Y
F046431	Metagenome	151	Y
F084362	Metagenome	112	N
F103430	Metagenome	101	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0119784_1000127	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → unclassified Eubacteriales → Clostridiales bacterium	59070
Ga0119784_1000762	Not Available	22998
Ga0119784_1002653	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → unclassified Eubacteriales → Clostridiales bacterium	9444
Ga0119784_1004528	Not Available	6155
Ga0119784_1026938	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	1370

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0119784_1000127	Ga0119784_100012791	F046431	MLTYTQILVFAAESELTLTPKPETNNIHLKWTGPQNSSYKVYQKKPGSNNFETIGLTDFNNTDEEVKVLNIYPTIEGLPMVNVTYLDGQTETIPKSGLLKVWMEGRNSK*
Ga0119784_1000762	Ga0119784_100076230	F103430	MIEQITIKAFIGSDNKTKTLEVDKIISIVNANHEAFTLDYPVIGYWRGEAEETAVLYLSDERQKVMNTLNELKEVLDQEAIAYQIENDLQLI*
Ga0119784_1002653	Ga0119784_100265319	F046431	MKKITKINITIILILSIIISYGSVIISMAAESELTLTPKPETNNIHLKWTGPQNSSYKVYQKKPETTHFETIGLTDFSNNATDEEVKVLNIYPQEGITDGRLYPRETPEVVSNIFRSIPKVEVTYLDGTRETIQKSALLKVWMEGRNSKRR*
Ga0119784_1004528	Ga0119784_10045286	F084362	MSLINCTFTVRWSDDKNKPHAKTYATEADTKRAKKWLLEHGIRSVDIAVKINNKPAGSLKDDKQSETEAEQKGFWWEK*
Ga0119784_1026938	Ga0119784_10269383	F033081	MYPPDLMVVHRPRKGAMAWLFNRVMPTDNRPTFVWPRLVVAIEDTRHFDRRELSVIAVVLIVMTIATIKALLFIPGLDSSVVELLTSIFATFLPARWATGAAWVAGVAGVLLIGDFTNYTKQQKALHSLKATRCEAYNTLLLFALWEEQAFRSGSERWSWCERVRASVCFGLAHVVNIWYSFAAGTALSMTGFGFLLVYLWYYRKYRSQIIATAAAATVHALYNAIALSLIAVTAAVYLAINIAKML*