Scaffold Ga0120379_1000554

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0120379_1000554

Scaffold Ga0120379_1000554

Overview

Basic Information
Taxon OID	3300011979 Open in IMG/M
Scaffold ID	Ga0120379_1000554 Open in IMG/M
Source Dataset Name	Sheep rumen microbial communities from Wyoming, USA - O_aries_Con_1396
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Missouri
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	34237
Total Scaffold Genes	29 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	21 (72.41%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Mammals → Digestive System → Foregut → Rumen → Sheep Rumen → Ruminant Gut Microbial Communities From Various Locations In Usa

Source Dataset Sampling Location
Location Name	USA: Wyoming
Coordinates	Lat. (^o)	41.314168	Long. (^o)	-105.584589	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F081453	Metagenome	114	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0120379_100055429	F081453	N/A	LLIGETISKRMTPANPVYGTNIKAPEIAVKGAPGRKCV*

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