Scaffold Ga0120375_1001739

Overview

Basic Information

• Taxon OID: 3300011977
• Scaffold ID: Ga0120375_1001739
• Source Dataset Name: Sheep rumen microbial communities from Wyoming, USA - O_aries_Con_1111
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Missouri
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 16151
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (14.29%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → unclassified Saccharibacteria → TM7 phylum sp. oral taxon 352 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Mammals → Digestive System → Foregut → Rumen → Sheep Rumen → Ruminant Gut Microbial Communities From Various Locations In Usa

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 41.314168
  • Long. (^o): -105.584589

Associated Families

Family	Category	Number of Sequences	3D Structure?
F028722	Metagenome / Metatranscriptome	190	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0120375_10017399	F028722	N/A	MSTINENGQTCLELRGITERQNEIVRSDYNIEDQYGPTHKDALSDGDALGKGTGHGGHTAWLPDCSKPTNMIDYSNFDTFNGGGIYDIEGRNDIGGRKKAMASELYNNENQYGADLIKTAENVAQGQYFIGQTTKNL*