3300011977: Sheep rumen microbial communities from Wyoming, USA - O_aries_Con_1111

Overview

Basic Information

• IMG/M Taxon OID: 3300011977
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0118654 | Gp0138580 | Ga0120375
• Sample Name: Sheep rumen microbial communities from Wyoming, USA - O_aries_Con_1111
• Sequencing Status: Permanent Draft
• Sequencing Center: University of Missouri
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 192833035
• Sequencing Scaffolds: 5
• Novel Protein Genes: 5
• Associated Families: 5

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → unclassified Saccharibacteria → TM7 phylum sp. oral taxon 352	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Pucciniomycotina → Pucciniomycetes → Pucciniales → Pucciniaceae → Puccinia → Puccinia striiformis → Puccinia striiformis f. sp. tritici → Puccinia striiformis f. sp. tritici PST-78	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Ruminant Gut Microbial Communities From Various Locations In Usa
• Type: Host-Associated
• Taxonomy: Host-Associated → Mammals → Digestive System → Foregut → Rumen → Sheep Rumen → Ruminant Gut Microbial Communities From Various Locations In Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal proximal gut

Location Information

• Location: USA: Wyoming
• Coordinates
  • Lat. (^o): 41.314168
  • Long. (^o): -105.584589
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F028722	Metagenome / Metatranscriptome	190	Y
F035626	Metagenome / Metatranscriptome	171	Y
F041054	Metagenome / Metatranscriptome	160	Y
F076635	Metagenome / Metatranscriptome	118	Y
F097402	Metagenome / Metatranscriptome	104	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0120375_1001739	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → unclassified Saccharibacteria → TM7 phylum sp. oral taxon 352	16151
Ga0120375_1001857	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	15169
Ga0120375_1006448	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	4357
Ga0120375_1021009	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Pucciniomycotina → Pucciniomycetes → Pucciniales → Pucciniaceae → Puccinia → Puccinia striiformis → Puccinia striiformis f. sp. tritici → Puccinia striiformis f. sp. tritici PST-78	1266
Ga0120375_1029046	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	907

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0120375_1001739	Ga0120375_10017399	F028722	MSTINENGQTCLELRGITERQNEIVRSDYNIEDQYGPTHKDALSDGDALGKGTGHGGHTAWLPDCSKPTNMIDYSNFDTFNGGGIYDIEGRNDIGGRKKAMASELYNNENQYGADLIKTAENVAQGQYFIGQTTKNL*
Ga0120375_1001857	Ga0120375_10018575	F076635	MIKRGSKVRVVKMDTAGGMDWQAKRLEGKIFTVRFIDSAEQIHIEETGIALIPGVDEYSFFFSAD*
Ga0120375_1006448	Ga0120375_10064489	F097402	MTNLDHIQSLIRHGAQLRGEDGSLTPLTKAFYHNAVEACHTGGYNAATYDLVLPGIDSELWLAIWKDGHADSGSPKSICACLAR*
Ga0120375_1021009	Ga0120375_10210091	F035626	VLPLQGLMAPSVVNDTVQGETFLPGQIFVFGGFALRANSLGHLEQIESYAPGHQVRFGSLNYTADIRGDLILDGFEPQPSVPHCHDGHDLALPPNSAQDAAPVFASTLSSEPTAPIEDGWLDTA
Ga0120375_1029046	Ga0120375_10290461	F041054	MANQDLLKLLYYTDKDPLSHEDLTKEQIQKEVFEKLIKITPRVGPKETANAVVAIRIVSGQANPENNQFRNVSIGIEVFTPMDQWVMKGVQLRPFAILGEIQKSLSNKTINGLGKMQGGSFTLNFLTEEMSDYEMNFDIISYD*