NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0119780_100172

Scaffold Ga0119780_100172


Overview

Basic Information
Taxon OID3300011936 Open in IMG/M
Scaffold IDGa0119780_100172 Open in IMG/M
Source Dataset NameHuman oral microbial communities from Los Angeles, CA, USA - S01-06-R
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of California, Los Angeles
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)44661
Total Scaffold Genes60 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)52 (86.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Oral Cavity → Subgingival Plaque → Human Oral → Human Oral Microbial Communities From Los Angeles, Ca, Usa

Source Dataset Sampling Location
Location NameUSA: Los Angeles
CoordinatesLat. (o)34.0722Long. (o)-118.4441Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F027205Metagenome195N
F051214Metagenome144N
F081456Metagenome114N

Sequences

Protein IDFamilyRBSSequence
Ga0119780_10017213F051214AGGAGMPGKIVAHDTHLRIDTEFIDLKDCFEAFRRGVEYREKNDVDDILVICNAPDIIEYQLKNGDSFIVTYDPIHRIIVMRVFLHDEDITIKPIYIYNNREYQIACEFLRQIMHDKIDLKKEWLA*
Ga0119780_10017227F081456N/ALGYRLFLEKGAHMFEEPPIYYILISLIFLIVFGAISFATWLVWLTNVTFFVKLVITAIGFLLCAMTVILYTISAE*
Ga0119780_1001729F027205AGGAVASRLIVSADDILKAVKESEEFERKALSEARKRDRAEGKEPRETLYPNPDLKPGREIVLDYIKNPERRRTPRCSVHLEKRTANNSYRFIVDVSQVRNRELADEIEKDLFAFMDYLLDEYDIPRRIKK*

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